
PFRMAT AL
TARGET T0105
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1lya_A
T 639    P  24
P 640    P  25
R 641    Q  26
E 642    C  27
F 643    F  28
E 644    T  29
I 645    V  30
E 646    V  31
G 647    F  32
D 648    D  33
R 649    T  34
G 650    G  35
A 651    S  36
S 652    S  37
K 653    N  38
N 654    L  39
W 655    W  40
K 656    V  41
L 657    P  42
S 658    S  43
I 659    I  44
R 660    H  45
C 661    C  46
G 662    K  47
V 668    C  53
L 669    W  54
M 670    I  55
E 671    H  56
N 672    H  57
K 673    K  58
F 674    Y  59
L 675    N  60
P 676    S  61
E 677    D  62
P 678    K  63
P 679    S  64
S 680    S  65
T 681    T  66
R 682    Y  67
K 683    V  68
K 684    K  69
V 685    N  70
TER
END


