
PFRMAT AL
TARGET T0105
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1a0h_A
S 603    S 164
E 604    P 165
L 605    L 166
P 606    L 167
V 607    E 168
T 608    T 169
C 609    C 170
G 610    V 171
E 611    P 172
V 612    D 173
K 613    R 174
G 614    G 175
T 615    R 176
L 616    E 177
Y 617    Y 178
K 618    R 179
E 619    G 180
R 620    R 181
F 621    L 182
K 622    A 183
Q 623    V 184
G 624    T 185
T 625    T 186
S 626    H 187
K 627    S 189
K 628    R 190
C 629    C 191
I 630    L 192
K 636    A 193
W 637    W 194
F 638    S 195
T 639    S 196
P 640    E 197
R 641    Q 198
E 642    A 199
F 643    K 200
E 644    A 201
I 645    L 202
E 646    S 203
G 647    K 204
D 648    D 205
R 649    Q 206
G 650    D 207
A 651    F 208
S 652    N 209
K 653    P 210
N 654    V 212
W 655    P 213
K 656    L 214
L 657    A 215
S 658    E 216
I 659    N 217
R 660    F 218
C 661    C 219
G 662    R 220
G 663    N 221
Y 664    P 222
T 665    D 223
L 666    G 224
K 667    D 225
V 668    E 226
L 669    E 227
M 670    G 228
E 671    A 229
N 672    W 230
K 673    C 231
F 674    Y 232
L 675    V 233
P 676    A 234
E 677    D 235
P 678    Q 236
P 679    P 237
S 680    G 238
T 681    D 239
R 682    F 240
K 683    E 241
K 684    Y 242
V 685    C 243
T 686    D 244
I 687    L 245
K 688    N 246
TER
END


