
PFRMAT SS
TARGET T0105
AUTHOR 7770-2312-5826
REMARK GROUP NAME: SHESTOPALOV
REMARK GROUP LEADER: Shestopalov Boris V.
REMARK E-mail: shest@mail.cytspb.rssi.ru
METHOD It is suggested to submit up to five models.
METHOD MODEL A is single sequence prediction,
METHOD obtained by DOUBLET CODE METHOD as model 3
METHOD in CASP3, with slightly modified code tables
METHOD (see CASP3, Shestopalov B.V., submitted).
METHOD MODEL B is obtained from MODEL A by transforming
METHOD ambiguous and undetermined regions into COIL.
METHOD MODEL C is multiple sequence prediction,
METHOD obtained by application of DOUBLET CODE METHOD
METHOD and PSI-BLAST (Altschul S.F., Madden T.L.,
METHOD Schaffer A.A., Zhang J., Zhang Z, Miller W &
METHOD Lipman D.J. /1997/. Nucl. Acid. Res. v. 25,
METHOD pp 3389-3402).
METHOD MODEL D is variant of MODEL C obtained using
METHOD Prodom. MODEL E is special model to be described
METHOD in the case of its submission.
METHOD The number 1 is assigned to MODEL E, if no -
METHOD to MODEL D, if no - to MODEL C, if no - to MODEL B.
METHOD Here MODEL E is based on the threading MODEL "AL1".
MODEL  1
REMARK Here MODEL 1 is MODEL E.
D C 1.00
E C 1.00
N C 1.00
I E 1.00
N E 1.00
F E 1.00
K E 1.00
Q C 1.00
S C 1.00
E C 1.00
L C 1.00
P E 1.00
V E 1.00
T E 1.00
C E 1.00
G C 1.00
E C 1.00
V C 1.00
K C 1.00
G C 1.00
T C 1.00
L H 1.00
Y H 1.00
K H 1.00
E H 1.00
R H 1.00
F H 1.00
K H 1.00
Q H 1.00
G C 1.00
T C 1.00
S C 1.00
K C 1.00
K C 1.00
C C 1.00
I C 1.00
Q C 1.00
S C 1.00
E C 1.00
D C 1.00
K C 1.00
K E 1.00
W E 1.00
F E 1.00
T C 1.00
P C 1.00
R C 1.00
E E 1.00
F E 1.00
E E 1.00
I E 1.00
E C 1.00
G C 1.00
D C 1.00
R H 1.00
G H 1.00
A H 1.00
S H 1.00
K H 1.00
N H 1.00
W H 1.00
K H 1.00
L H 1.00
S H 1.00
I H 1.00
R H 1.00
C C 1.00
G C 1.00
G C 1.00
Y H 1.00
T H 1.00
L H 1.00
K H 1.00
V H 1.00
L H 1.00
M H 1.00
E H 1.00
N C 1.00
K E 1.00
F E 1.00
L E 1.00
P C 1.00
E C 1.00
P C 1.00
P C 1.00
S C 1.00
T C 1.00
R E 1.00
K E 1.00
K E 1.00
V E 1.00
T E 1.00
I E 1.00
K C 1.00
END

