
PFRMAT SS
TARGET T0105
AUTHOR 6153-6797-7392
METHOD The nearest neighbour method based on the FFAS
METHOD profile-profile matching algorithm.
METHOD 
METHOD The FFAS sequence profile method is described in:
METHOD 
METHOD Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD "Comparison of sequence profiles. Strategies for structural
METHOD predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD The prototype of the secondary structure prediction
METHOD method is described in:
METHOD Rychlewski, L., and Godzik. A, (1997) 
METHOD "Secondary structure prediction using segment similarity", 
METHOD Protein Eng 10, 1143-1153 
METHOD 
METHOD The detailed description of the method will be a subject
METHOD of the separate publication.
METHOD 
MODEL 1
D C 0.78
E C 0.67
N C 0.67
I E 0.56
N C 0.56
F C 0.67
K C 0.67
Q C 0.78
S C 0.89
E C 0.78
L C 0.56
P E 0.67
V E 0.78
T E 0.78
C E 0.67
G C 0.67
E C 0.56
V E 0.67
K E 0.67
G C 0.56
T E 0.67
L E 0.67
Y E 0.56
K H 0.56
E H 0.56
R C 0.44
F E 0.67
K C 0.89
Q C 1.00
G C 1.00
T C 0.89
S C 0.67
K E 0.78
K E 0.89
C E 0.89
I E 0.89
Q E 0.89
S E 0.78
E C 0.78
D C 1.00
K C 0.89
K C 0.67
W E 0.89
F E 0.89
T C 0.89
P C 0.67
R H 0.56
E H 0.67
F H 0.67
E H 0.67
I H 0.67
E H 0.56
G C 0.78
D C 0.89
R C 0.78
G C 0.78
A C 0.67
S C 0.67
K C 0.67
N C 0.78
W C 0.67
K E 0.56
L E 0.56
S E 0.67
I E 0.78
R E 0.67
C E 0.56
G C 0.89
G C 0.89
Y C 0.67
T H 0.78
L H 1.00
K H 1.00
V H 1.00
L H 0.89
M H 0.89
E H 0.89
N C 0.78
K C 0.89
F C 0.78
L C 0.78
P C 0.78
E C 0.89
P C 0.89
P C 0.89
S C 0.89
T C 0.78
R C 0.78
K C 0.67
K C 0.67
V C 0.56
T E 0.44
I C 0.44
K C 0.44
END
 - - - - - - - - - - - - - - - - - -
 Lukasz Jaroszewski, Ph. D.
 The Burnham Institute,
 10901 North Torrey Pines Road,
 La Jolla, CA 92037, USA
 phone +1 (858) 646 3100 ext. 3553
 fax  +1 (858) 646 3171
 - - - - - - - - - - - - - - - - - -

