
PFRMAT TS
TARGET T0105
AUTHOR 5477-6509-1337
MODEL 2 UNREFINED
REMARK
REMARK   Work performed by Kai-Ming Ho, James R. Morris, Cai-Zhuang Wang,
REMARK                   Drena Dobbs, Tzu-Liang Chan, Young-Ok Im,
REMARK                   Josh Koch, Neil Voss, Dion Harmon
REMARK
REMARK   Acknowledgments to Amy Andreotti and Josh Lapan
REMARK
REMARK   Work supported by Pioneer Hi-Bred, by a Carver Foundation grant
REMARK     from Iowa State University, and a Laboratory Directed 
REMARK     Research and Development grant from Ames Laboratory, U.S.D.O.E.
REMARK
REMARK
METHOD   The three models we are submitting are ab initio predictions,
METHOD   made by annealing the prediction using our coarse grained
METHOD   molecular dynamics model (two beads, one for the backbone and
METHOD   one for the side chain).  The generated structures are
METHOD   all-alpha secondary structures.  Each of the different models
METHOD   were generated with this approach, using three different
METHOD   annealing schedules.  The first two models are nearly
METHOD   identical in energy, while the third is higher. 
METHOD
METHOD   All atom models were generated using the MaxSprout Server (L. Holm,
METHOD   C. Sander (1991) J. Mol. Biol. 218:183-194), using the CA positions
METHOD   from the coarse grained model.  The resulting backbone is broken
METHOD   in a number of places, where the original CA only model was fully
METHOD   connected.  The "unrefined" model contains the original CA trace.
REMARK
REMARK   (Model E)
REMARK
PARENT N/A
ATOM      1  CA  ASP   595     -16.366  -1.616   3.079  1.00  5.00           C
ATOM      2  CA  GLU   596     -12.690  -0.554   3.347  1.00  5.00           C
ATOM      3  CA  ASN   597     -11.956  -2.769   0.329  1.00  5.00           C
ATOM      4  CA  ILE   598     -13.987  -5.546   1.977  1.00  5.00           C
ATOM      5  CA  ASN   599     -12.243  -8.910   1.533  1.00  5.00           C
ATOM      6  CA  PHE   600      -9.210  -6.900   0.387  1.00  5.00           C
ATOM      7  CA  LYS   601      -7.223 -10.139   0.717  1.00  5.00           C
ATOM      8  CA  GLN   602      -8.708 -10.500   4.213  1.00  5.00           C
ATOM      9  CA  SER   603      -7.196  -7.074   4.942  1.00  5.00           C
ATOM     10  CA  GLU   604      -3.867  -8.609   3.885  1.00  5.00           C
ATOM     11  CA  LEU   605      -4.562 -11.344   6.451  1.00  5.00           C
ATOM     12  CA  PRO   606      -1.292 -12.958   5.329  1.00  5.00           C
ATOM     13  CA  VAL   607       0.343  -9.537   5.747  1.00  5.00           C
ATOM     14  CA  THR   608       2.993 -10.674   3.250  1.00  5.00           C
ATOM     15  CA  CYS   609       3.473 -13.784   5.407  1.00  5.00           C
ATOM     16  CA  GLY   610       3.901 -11.440   8.387  1.00  5.00           C
ATOM     17  CA  GLU   611       6.547  -9.555   6.387  1.00  5.00           C
ATOM     18  CA  VAL   612       8.281 -12.923   5.931  1.00  5.00           C
ATOM     19  CA  LYS   613       8.074 -13.339   9.718  1.00  5.00           C
ATOM     20  CA  GLY   614       9.785  -9.937   9.951  1.00  5.00           C
ATOM     21  CA  THR   615      12.573 -11.388   7.790  1.00  5.00           C
ATOM     22  CA  LEU   616      12.778 -14.186  10.375  1.00  5.00           C
ATOM     23  CA  TYR   617      13.257 -11.463  13.004  1.00  5.00           C
ATOM     24  CA  LYS   618      16.102  -9.994  10.885  1.00  5.00           C
ATOM     25  CA  GLU   619      15.603  -6.645  12.594  1.00  5.00           C
ATOM     26  CA  ARG   620      15.691  -8.346  15.966  1.00  5.00           C
ATOM     27  CA  PHE   621      12.425  -6.599  16.880  1.00  5.00           C
ATOM     28  CA  LYS   622      13.857  -3.273  15.678  1.00  5.00           C
ATOM     29  CA  GLN   623      10.775  -2.620  13.527  1.00  5.00           C
ATOM     30  CA  GLY   624       8.482  -3.889  16.299  1.00  5.00           C
ATOM     31  CA  THR   625       6.684  -0.540  16.529  1.00  5.00           C
ATOM     32  CA  SER   626       3.592  -2.430  17.721  1.00  5.00           C
ATOM     33  CA  LYS   627       3.957  -4.492  14.532  1.00  5.00           C
ATOM     34  CA  LYS   628       3.915  -1.140  12.711  1.00  5.00           C
ATOM     35  CA  CYS   629       0.596  -0.553  14.499  1.00  5.00           C
ATOM     36  CA  ILE   630      -0.559  -3.802  12.868  1.00  5.00           C
ATOM     37  CA  GLN   631       0.419  -2.263   9.517  1.00  5.00           C
ATOM     38  CA  SER   632      -1.674   0.772  10.498  1.00  5.00           C
ATOM     39  CA  GLU   633       0.308   2.640   7.827  1.00  5.00           C
ATOM     40  CA  ASP   634      -0.882  -0.106   5.461  1.00  5.00           C
ATOM     41  CA  LYS   635      -4.423   0.866   6.494  1.00  5.00           C
ATOM     42  CA  LYS   636      -3.402   4.418   5.550  1.00  5.00           C
ATOM     43  CA  TRP   637      -2.651   2.985   2.095  1.00  5.00           C
ATOM     44  CA  PHE   638      -6.229   1.661   2.155  1.00  5.00           C
ATOM     45  CA  THR   639      -7.414   5.150   3.161  1.00  5.00           C
ATOM     46  CA  PRO   640     -10.996   3.900   2.762  1.00  5.00           C
ATOM     47  CA  ARG   641     -11.926   4.445  -0.897  1.00  5.00           C
ATOM     48  CA  GLU   642      -8.164   4.364  -1.524  1.00  5.00           C
ATOM     49  CA  PHE   643      -8.911   1.439  -3.855  1.00  5.00           C
ATOM     50  CA  GLU   644     -11.332   3.744  -5.692  1.00  5.00           C
ATOM     51  CA  ILE   645      -8.382   6.109  -6.199  1.00  5.00           C
ATOM     52  CA  GLU   646     -10.912   8.891  -6.838  1.00  5.00           C
ATOM     53  CA  GLY   647     -12.552   6.549  -9.364  1.00  5.00           C
ATOM     54  CA  ASP   648      -9.195   6.228 -11.148  1.00  5.00           C
ATOM     55  CA  ARG   649      -8.983  10.059 -11.160  1.00  5.00           C
ATOM     56  CA  GLY   650      -5.194   9.732 -11.456  1.00  5.00           C
ATOM     57  CA  ALA   651      -2.867   7.858 -13.872  1.00  5.00           C
ATOM     58  CA  SER   652      -5.817   5.528 -14.521  1.00  5.00           C
ATOM     59  CA  LYS   653      -3.294   3.375 -16.406  1.00  5.00           C
ATOM     60  CA  ASN   654      -1.258   3.452 -13.180  1.00  5.00           C
ATOM     61  CA  TRP   655      -4.370   2.010 -11.509  1.00  5.00           C
ATOM     62  CA  LYS   656      -3.964  -0.893 -13.951  1.00  5.00           C
ATOM     63  CA  LEU   657      -0.323  -1.150 -12.728  1.00  5.00           C
ATOM     64  CA  SER   658      -0.419  -4.894 -13.360  1.00  5.00           C
ATOM     65  CA  ILE   659      -3.853  -5.051 -11.650  1.00  5.00           C
ATOM     66  CA  ARG   660      -2.751  -8.347 -10.077  1.00  5.00           C
ATOM     67  CA  CYS   661       0.315  -6.473  -8.795  1.00  5.00           C
ATOM     68  CA  GLY   662       1.338  -9.687  -6.964  1.00  5.00           C
ATOM     69  CA  GLY   663      -2.158  -9.980  -5.447  1.00  5.00           C
ATOM     70  CA  TYR   664      -2.134  -6.294  -4.499  1.00  5.00           C
ATOM     71  CA  THR   665       1.193  -6.774  -2.694  1.00  5.00           C
ATOM     72  CA  LEU   666       0.363  -3.604  -0.740  1.00  5.00           C
ATOM     73  CA  LYS   667       3.975  -3.502   0.484  1.00  5.00           C
ATOM     74  CA  VAL   668       5.278  -3.397  -3.100  1.00  5.00           C
ATOM     75  CA  LEU   669       2.636  -0.785  -3.967  1.00  5.00           C
ATOM     76  CA  MET   670       4.772  -0.044  -7.040  1.00  5.00           C
ATOM     77  CA  GLU   671       7.524   0.791  -4.534  1.00  5.00           C
ATOM     78  CA  ASN   672       5.163   3.502  -3.258  1.00  5.00           C
ATOM     79  CA  LYS   673       4.725   4.673  -6.891  1.00  5.00           C
ATOM     80  CA  PHE   674       1.152   5.675  -6.004  1.00  5.00           C
ATOM     81  CA  LEU   675       2.514   7.658  -3.033  1.00  5.00           C
ATOM     82  CA  PRO   676       0.003  10.408  -3.731  1.00  5.00           C
ATOM     83  CA  GLU   677       0.831  10.176  -7.482  1.00  5.00           C
ATOM     84  CA  PRO   678      -2.527  11.858  -8.151  1.00  5.00           C
ATOM     85  CA  PRO   679      -2.219  15.577  -7.362  1.00  5.00           C
ATOM     86  CA  SER   680       1.089  14.635  -5.711  1.00  5.00           C
ATOM     87  CA  THR   681       1.412  18.321  -4.783  1.00  5.00           C
ATOM     88  CA  ARG   682       0.855  19.120  -8.472  1.00  5.00           C
ATOM     89  CA  LYS   683       3.824  16.833  -9.183  1.00  5.00           C
ATOM     90  CA  LYS   684       5.710  19.015  -6.685  1.00  5.00           C
ATOM     91  CA  VAL   685       4.661  21.945  -8.892  1.00  5.00           C
ATOM     92  CA  THR   686       6.273  20.066 -11.794  1.00  5.00           C
ATOM     93  CA  ILE   687       9.423  19.683  -9.703  1.00  5.00           C
ATOM     94  CA  LYS   688      11.565  16.633 -10.513  1.00  5.00           C
TER
END


