
PFRMAT AL
TARGET T0106
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1bea
I   63 S 5
C   64 C 6
T   65 V 7
I   66 P 8
D   67 G 9
F   68 W 10
Q   69 P 13
H   70 H 14
E   71 N 15
P   72 P 16
I   73 L 17
K   74 P 18
P   75 S 19
C   76 C 20
K   77 R 42
S   78 R 43
V   79 C 44
C   80 C 45
E   81 R 46
R   82 E 47
A   83 L 48
R   84 A 49
Q   85 D 50
G   86 R 56
C   87 C 57
E   88 S 61
P   89 I 62
I   90 L 63
L   91 M 64
I   92 D 65
K   93 G 66
Y   94 A 67
R   95 I 68
H   96 P 69
S   97 P 70
W   98 G 71
P   99 P 72
E  100 D 73
S  101 Q 75
L  102 L 76
A  103 E 77
C  104 L 80
D  105 E 81
E  106 D 82
L  107 L 83
P  108 P 84
V  109 G 85
Y  110 C 86
D  111 P 87
R  112 R 88
G  113 E 89
V  114 E 103
C  115 C 104
I  116 N 105
S  117 L 106
P  118 A 107
E  119 T 108
A  120 I 109
I  121 S 110
V  122 G 111
T  123 V 112
A  124 A 113
D  125 E 114
G  126 G 120
TER
END

