
PFRMAT AL
TARGET T0106
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1aua
P    5 Q 4
V    6 Q 5
R    7 E 6
I    8 K 7
P    9 E 8
L   10 F 9
C   11 L 10
K   12 E 11
S   13 S 12
L   14 Y 13
P   15 P 14
W   16 Q 15
E   17 N 16
M   18 C 17
T   19 D 20
K   20 A 21
M   21 L 22
P   22 P 23
N   23 G 24
H   24 T 25
L   25 P 26
H   26 G 27
H   27 N 28
S   28 S 31
T   29 A 32
Q   30 Q 33
A   31 E 34
N   32 K 35
A   33 A 36
I   34 L 37
L   35 A 38
A   36 E 39
M   37 L 40
E   38 K 42
Q   39 L 43
F   40 L 44
E   41 E 45
G   42 D 46
L   43 A 47
L   44 G 48
G   45 F 49
T   46 I 50
H   47 E 51
C   48 R 52
S   49 L 53
P   50 D 54
D   51 D 55
L   52 L 58
L   53 L 59
F   54 R 60
F   55 F 61
L   56 L 62
C   57 R 63
A   58 A 64
M   59 R 65
D   67 K 66
F   68 F 67
Q   69 D 68
H   70 V 69
E   71 Q 70
P   72 L 71
I   73 A 72
K   74 K 73
P   75 E 74
C   76 E 77
K   77 N 78
S   78 C 79
V   79 E 80
C   80 K 81
E   81 W 82
R   82 R 83
A   83 K 84
R   84 D 85
Q   85 Y 86
G   86 G 87
C   87 T 88
E   88 D 89
P   89 T 90
I   90 I 91
L   91 L 92
I   92 Q 93
K   93 D 94
Y   94 F 95
R   95 H 96
TER
END

