
PFRMAT AL
TARGET T0106
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1ycs_B
P    5 P 327
V    6 L 328
R    7 A 329
I    8 L 330
P    9 L 331
L   10 L 332
C   11 V 343
K   12 Q 344
S   13 R 345
L   14 I 346
P   15 I 347
W   16 Y 348
E   17 E 349
M   18 V 350
T   19 P 353
K   20 S 354
M   21 L 355
P   22 P 356
N   23 N 357
H   24 D 358
L   25 E 359
H   26 G 360
H   27 I 361
S   28 T 362
T   29 A 363
Q   30 L 364
A   31 H 365
N   32 N 366
A   33 A 367
L   44 V 368
G   45 C 369
T   46 A 370
H   47 G 371
S   49 H 372
P   50 T 373
D   51 E 374
L   52 I 375
L   53 V 376
F   54 K 377
F   55 F 378
L   56 L 379
C   57 V 380
A   58 Q 381
M   59 F 382
Y   60 G 383
A   61 V 384
P   62 N 385
I   63 V 386
C   64 N 387
T   65 A 388
I   66 A 389
D   67 D 390
F   68 S 391
Q   69 D 392
H   70 G 393
E   71 W 394
P   72 T 395
I   73 P 396
K   74 L 397
P   75 H 398
C   76 C 399
K   77 A 400
S   78 A 401
V   79 S 402
C   80 C 403
E   81 N 404
R   82 N 405
A   83 V 406
Q   85 Q 407
G   86 V 408
C   87 C 409
E   88 K 410
P   89 F 411
I   90 L 412
L   91 V 413
I   92 E 414
K   93 S 415
Y   94 F 420
R   95 A 421
H   96 M 422
S   97 T 423
W   98 Y 424
P   99 S 425
E  100 D 426
S  101 M 427
L  102 T 429
A  103 A 430
C  104 A 431
D  105 D 432
E  106 K 433
L  107 C 434
P  108 E 435
V  109 E 436
Y  110 M 437
D  111 E 438
R  112 E 439
G  113 G 440
V  114 Y 441
C  115 C 444
I  116 M 455
S  117 G 456
TER
END

