
PFRMAT AL
TARGET T0107
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1a5r
N   20 G -1
T   21 S 0
T   22 M 1
E   23 S 2
E   24 D 3
I   25 Q 4
E   26 E 5
R   27 A 6
K   28 K 7
A   29 P 8
V   30 S 9
A   31 T 10
M   32 E 11
G   33 D 12
S   34 L 13
L   35 G 14
D   36 D 15
K   37 K 16
N   38 K 17
A   39 E 18
T   40 G 19
A   41 E 20
K   42 Y 21
V   43 I 22
R   44 K 25
V   45 V 26
L   46 I 27
W   47 G 28
D   48 Q 29
E   49 D 30
N   50 S 31
Y   51 S 32
L   52 E 33
Y   53 I 34
V   54 H 35
L   55 F 36
A   56 K 37
I   57 V 38
V   58 K 39
K   59 M 40
D   60 T 41
P   61 T 42
V   62 H 43
L   63 L 44
N   64 K 45
K   65 K 46
D   66 Q 53
N   67 R 54
S   68 Q 55
N   69 G 56
P   70 V 57
E   72 P 58
Q   73 M 59
D   74 N 60
S   75 S 61
V   76 L 62
E   77 R 63
I   78 F 64
F   79 L 65
I   80 F 66
D   81 E 67
E   82 A 72
N   83 D 73
N   84 N 74
H   85 H 75
K   86 T 76
T   87 P 77
G   88 K 78
Y   89 E 79
Y   90 L 80
E   91 G 81
D   92 M 82
D   93 E 83
D   94 E 84
A   95 E 85
Q   96 D 86
R   98 V 87
V   99 I 88
N  100 E 89
Y  101 V 90
M  102 Y 91
N  103 Q 92
E  104 E 93
Q  105 Q 94
T  106 T 95
G  110 G 96
G  111 G 97
S  112 H 98
P  113 S 99
A  114 T 100
R  115 V 101
TER
END

