
PFRMAT AL
TARGET T0107
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.87 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1vvd_2
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1vvd
A   4     V    59
K   5     K    60
Y   6     C    61
G   7     P    62
T   8     H    63
P   9     P    64
V  10     T    65
I  11     I    66
D  12     S    67
G  13     N    68
G  33     G    69
S  34     Y    70
L  35     L    71
D  36     S    72
K  37     S    73
N  38     G    74
A  39     F    75
T  40     K    76
A  41     R    77
K  42     S    78
V  43     Y    79
R  44     S    80
E  72     Y    81
Q  73     N    82
D  74     D    83
S  75     N    84
V  76     V    85
E  77     D    86
I  78     F    87
N  84     K    88
H  85     C    89
K  86     K    90
T  87     Y    91
G  88     G    92
Y  89     Y    93
Y  90     K    94
E  91     L    95
D  92     S    96
D  93     G    97
D  94     S    98
A  95     S    99
Q  96     S   100
F  97     S   101
R  98     T   102
V  99     C   103
N 100     S   104
Y 101     P   105
M 102     G   106
N 103     N   107
S 166     T   108
W 167     W   109
S 168     K   110
D 169     P   111
P 170     E   112
T 171     L   113
N 172     P   114
N 173     K   115
S 174     C   116
W 175     V   117
R 176     R   118
TER
END

