
PFRMAT AL
TARGET T0107
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1knb
E   26 N 396
R   27 D 397
K   28 K 398
A   29 L 399
V   30 T 400
A   31 L 401
M   32 W 402
G   33 C 411
S   34 R 412
L   35 L 413
D   36 N 414
K   37 A 415
N   38 E 416
A   39 K 417
T   40 D 418
A   41 A 419
K   42 K 420
V   43 L 421
R   44 T 422
V   45 L 423
L   46 V 424
W   47 L 425
D   48 T 426
E   49 K 427
N   50 C 428
Y   51 G 429
L   52 S 430
Y   53 Q 431
V   54 I 432
L   55 L 433
A   56 A 434
I   57 T 435
V   58 V 436
D   60 S 437
P   61 V 438
V   62 L 439
L   63 A 440
N   64 V 441
K   65 K 442
D   66 G 443
N   67 S 444
S   68 L 445
N   69 A 446
P   70 P 447
W   71 I 448
E   72 S 449
Q   73 V 452
D   74 Q 453
S   75 S 454
V   76 A 455
E   77 H 456
I   78 L 457
F   79 I 458
I   80 I 459
D   81 D 462
E   82 E 463
N   83 N 464
N   84 G 465
H   85 L 468
K   86 N 469
T   87 N 470
G   88 S 471
Y   89 F 472
Y   90 L 473
E   91 D 474
D   92 P 475
D   93 E 476
D   94 Y 477
A   95 W 478
Q   96 N 479
F   97 F 480
R   98 R 481
M  102 N 482
N  103 G 483
E  104 D 484
Q  105 L 485
T  106 T 486
F  107 E 487
G  108 G 488
T  109 T 489
G  110 A 490
G  111 T 492
S  112 N 493
P  113 A 494
A  114 V 495
R  115 G 496
F  116 F 497
K  117 L 501
T  118 S 502
A  119 A 503
V  120 Y 504
K  121 P 505
L  122 K 506
I  123 S 507
E  124 H 508
G  125 G 509
G  126 K 510
Y  127 N 515
I  128 I 516
V  129 V 517
A  131 S 518
A  132 Q 519
I  133 V 520
K  134 Y 521
W  135 L 522
K  139 N 523
P  140 G 524
T  141 D 525
P  142 K 526
N  143 T 527
T  144 K 528
V  145 P 529
I  146 V 530
G  147 T 531
F  148 L 532
N  149 T 533
I  150 I 534
Q  151 T 535
V  152 L 536
N  153 N 537
D  154 G 538
A  155 T 539
N  156 Q 540
E  157 E 541
K  158 T 542
G  159 G 543
Q  160 A 549
R  161 Y 550
V  162 S 551
G  163 M 552
I  164 S 553
I  165 F 554
S  166 S 555
W  167 W 556
D  169 D 557
P  170 W 558
T  171 S 559
N  172 G 560
N  173 H 561
S  174 N 562
W  175 Y 563
R  176 I 564
D  177 N 565
S  179 E 566
K  180 I 567
F  181 F 568
G  182 A 569
N  183 S 576
L  184 Y 577
R  185 I 578
L  186 A 579
I  187 Q 580
K  188 E 581
TER
END

