
PFRMAT AL
TARGET T0107
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1qvc_A
A   39 A 1
T   40 S 2
A   41 R 3
K   42 G 4
V   43 V 5
R   44 N 6
V   45 K 7
L   46 V 8
L   52 I 9
Y   53 L 10
V   54 V 11
L   55 G 12
A   56 N 13
I   57 L 14
V   58 G 15
K   59 Q 16
D   60 D 17
P   61 P 18
V   62 E 19
L   63 V 20
N   64 R 21
K   65 Y 22
D   66 M 23
N   67 P 24
S   68 N 25
N   69 G 26
D   74 G 27
S   75 A 28
V   76 V 29
E   77 A 30
I   78 N 31
F   79 I 32
I   80 S 37
D   81 E 38
E   82 S 39
N   83 W 40
N   84 R 41
H   85 D 42
K   86 K 43
T   87 A 44
G   88 T 45
Y   89 G 46
Y   90 E 47
E   91 M 48
D   92 K 49
D   93 E 50
D   94 Q 51
A   95 T 52
Q   96 E 53
F   97 W 54
R   98 R 56
V   99 V 57
N  100 V 58
Y  101 L 59
M  102 F 60
N  103 G 61
E  104 K 62
Q  105 L 63
F  116 A 64
K  117 E 65
T  118 V 66
A  119 A 67
V  120 S 68
K  121 E 69
L  122 Y 70
I  123 L 71
E  124 R 72
G  125 K 73
G  126 G 74
Y  127 S 75
I  128 Q 76
V  129 V 77
E  130 E 80
A  131 G 81
A  132 Q 82
I  133 L 83
K  134 R 84
W  135 T 85
K  136 R 86
T  137 K 87
I  138 W 88
K  139 T 89
P  140 Q 91
T  141 S 92
P  142 G 93
N  143 Q 94
T  144 D 95
V  145 R 96
I  146 Y 97
G  147 T 98
F  148 T 99
N  149 E 100
I  150 V 101
Q  151 V 102
V  152 V 103
N  153 N 104
D  154 G 118
A  155 G 119
N  156 A 120
E  157 P 121
K  158 A 122
G  159 G 123
Q  160 G 124
R  161 N 125
V  162 I 126
G  163 G 127
S  168 G 128
D  169 G 129
P  170 Q 130
T  171 P 131
N  172 Q 132
N  173 G 133
S  174 G 134
W  175 W 135
R  176 G 136
D  177 Q 137
P  178 P 138
S  179 Q 139
K  180 Q 140
F  181 G 143
G  182 G 144
N  183 N 145
TER
END

