
PFRMAT AL
TARGET T0107
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1pbk
E   49 P 109
N   50 K 110
Y   51 Y 111
L   52 T 112
Y   53 K 113
A   56 S 114
I   57 V 115
V   58 L 116
K   59 K 117
D   60 K 118
P   61 G 119
V   62 D 120
D   66 K 121
N   67 T 122
S   68 N 123
N   69 F 124
P   70 P 125
W   71 K 126
E   72 K 127
Q   73 G 128
D   74 D 129
S   75 V 130
V   76 V 131
E   77 H 132
I   78 C 133
F   79 W 134
I   80 Y 135
T   87 T 136
G   88 G 137
Y   89 T 138
Y   90 L 139
E   91 Q 140
D   92 D 141
D   93 G 142
D   94 T 143
Q   96 V 144
F   97 F 145
R   98 D 146
V   99 T 147
N  100 N 148
Y  101 I 149
M  102 Q 150
N  103 T 151
E  104 S 152
Q  105 A 153
T  106 K 154
F  107 K 155
G  108 K 156
T  109 K 157
G  110 N 158
G  111 A 159
S  112 K 160
P  113 P 161
A  114 L 162
R  115 S 163
F  116 F 164
K  117 D 176
T  118 E 177
A  119 A 178
V  120 L 179
K  121 L 180
L  122 T 181
I  123 M 182
E  124 S 183
G  125 K 184
G  126 G 185
Y  127 E 186
I  128 K 187
V  129 A 188
E  130 R 189
A  131 L 190
A  132 E 191
I  133 I 192
K  134 P 204
W  135 D 205
K  136 A 206
T  137 K 207
I  138 I 208
T  141 P 209
P  142 P 210
N  143 N 211
T  144 A 212
V  145 K 213
I  146 L 214
G  147 T 215
F  148 F 216
N  149 E 217
I  150 V 218
Q  151 E 219
V  152 L 220
N  153 V 221
D  154 D 222
A  155 I 223
N  156 D 224
TER
END

