
PFRMAT AL
TARGET T0107
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1kac_A
A    4 T 403
K    5 P 404
Y    6 Y 405
G    7 D 406
T    8 P 407
P    9 L 408
V   10 T 409
I   11 L 410
W   19 W 411
T   21 T 412
T   22 T 413
E   23 P 414
E   24 D 415
I   25 P 416
E   26 P 417
R   27 P 418
K   28 N 419
A   29 C 420
V   30 S 421
A   31 L 422
M   32 I 423
G   33 Q 424
S   34 E 425
L   35 L 426
D   36 D 427
A   39 A 428
T   40 K 429
A   41 L 430
K   42 T 431
V   43 L 432
R   44 C 433
V   45 L 434
L   46 T 435
W   47 K 436
D   48 N 437
E   49 G 438
N   50 S 439
Y   51 I 440
L   52 V 441
Y   53 V 445
V   54 S 446
L   55 L 447
A   56 V 448
I   57 G 449
V   58 V 450
K   59 K 451
D   60 G 452
P   61 N 453
V   62 L 454
L   63 L 455
N   64 N 456
K   65 I 457
D   66 Q 458
N   67 S 459
S   68 T 460
N   69 T 461
E   72 T 462
Q   73 T 463
D   74 V 464
S   75 G 465
V   76 V 466
E   77 H 467
I   78 L 468
F   79 V 469
I   80 F 470
D   81 D 471
E   82 E 472
N   83 T 478
N   84 S 479
H   85 T 480
K   86 P 481
T   87 T 482
G   88 A 483
Y   89 L 484
Y   90 V 485
E   91 P 486
D   92 Q 487
D   93 A 488
D   94 S 489
A   95 W 490
Q   96 G 491
F   97 Y 492
R   98 R 493
N  103 Q 494
E  104 G 495
Q  105 Q 496
T  106 S 497
F  107 V 498
G  108 S 499
T  109 T 500
G  110 N 501
G  111 T 502
S  112 V 503
P  113 T 504
A  114 L 507
R  115 G 508
F  116 F 509
K  117 V 513
T  118 S 514
A  119 A 515
V  120 Y 516
K  121 P 517
L  122 R 518
I  123 P 519
E  124 N 520
G  125 A 521
G  126 S 522
Y  127 E 523
I  128 A 524
V  129 K 525
E  130 S 526
A  131 Q 527
A  132 M 528
I  133 V 529
K  134 S 530
W  135 L 531
K  136 T 532
T  137 Y 533
I  138 L 534
K  139 Q 535
P  140 G 536
T  141 D 537
P  142 T 538
N  143 S 539
T  144 K 540
V  145 P 541
I  146 I 542
G  147 T 543
F  148 M 544
N  149 K 545
I  150 V 546
Q  151 A 547
V  152 F 548
N  153 N 549
D  154 G 550
A  155 I 551
N  156 T 552
E  157 S 553
K  158 L 554
G  159 N 555
Q  160 G 556
R  161 Y 557
V  162 S 558
G  163 L 559
I  164 T 560
I  165 F 561
S  166 M 562
W  167 W 563
S  168 S 567
D  169 N 568
P  170 Y 569
T  171 I 570
N  172 N 571
N  173 Q 572
S  174 P 573
W  175 F 574
R  176 S 575
D  177 T 576
P  178 P 577
S  179 S 578
K  180 C 579
F  181 S 580
G  182 F 581
N  183 S 582
L  184 Y 583
R  185 I 584
L  186 T 585
I  187 Q 586
K  188 E 587
TER
END

