
PFRMAT AL
TARGET T0108
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.36 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: porin
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  4
PARENT 1prn
M   1     I     2
G   2     S     3
A   3     L     4
S   4     N     5
G   5     G     6
Q   6     Y     7
Y   7     G     8
V   8     R     9
R   9     F    10
A  10     G    11
R  11     L    12
I  12     Q    13
K  13     Y    14
G  14     S    28
A  15     S    29
Y  16     R    30
Y  17     L    31
A  18     R    32
T  19     I    33
P  20     N    34
V  21     I    35
D  22     V    36
P  23     G    37
V  24     T    38
T  25     T    39
N  26     E    40
Q  27     T    41
P  28     D    42
T  29     Q    43
A  30     G    44
P  31     V    45
K  32     T    46
D  33     F    47
F  34     G    48
S  35     A    49
S  36     K    50
G  37     L    51
F  38     R    52
W  39     M    53
D  40     Q    54
F  41     W    55
N  42     D    56
D  43     D    57
G  44     G    58
T  45     D    59
T  46     A    60
Q  47     F    61
G  48     A    62
P  53     G    63
D  54     T    64
S  55     A    65
P  56     G    66
I  57     N    67
T  58     A    68
A  59     A    69
I  60     Q    70
N  61     F    71
V  62     W    72
E  63     T    73
N  64     S    74
A  65     Y    75
N  66     N    76
N  67     G    77
L  69     V    78
K  70     T    79
I  71     V    80
S  72     S    81
N  73     V    82
L  74     G    83
N  75     N    84
S  76     V    85
K  77     D    86
G  78     T    87
S  79     A    88
N  80     F    89
D  81     D    90
L  82     S    91
S  83     V    92
E  84     A    93
G  85     L    94
N  86     T    95
F  87     Y    96
W  88     D    97
A  89     S    98
N  90     E    99
V  91     M   100
R  92     G   101
I  93     Y   102
S  94     E   103
A  95     A   104
D  96     S   105
I  97     S   106
W  98     F   107
G  99     G   108
Q 100     D   109
S 101     A   110
I 102     Q   111
N 103     S   112
I 104     I   133
Y 105     A   134
G 106     V   135
D 107     T   136
T 108     Y   137
K 109     S   138
L 110     I   139
A 116     S   140
P 117     G   141
T 118     V   142
P 119     N   143
V 120     L   144
N 121     Y   145
V 122     L   146
S 123     S   147
I 124     Y   148
A 125     V   149
A 126     D   150
I 127     P   151
P 128     D   152
Q 129     Q   153
S 130     T   154
S 131     V   155
T 132     D   156
H 133     S   157
G 134     S   158
W 135     L   159
G 136     V   160
P 138     T   161
T 139     E   162
R 140     E   163
A 141     F   164
R 142     G   165
I 143     I   166
V 144     A   167
W 145     A   168
T 146     D   169
N 147     W   170
N 148     S   171
F 149     N   172
V 150     D   173
T 153     M   174
D 154     I   175
G 155     S   176
T 156     L   177
Y 157     A   178
K 158     A   179
A 159     A   180
T 160     Y   181
L 161     T   182
T 162     T   183
S 164     D   184
T 165     A   185
N 166     G   186
D 167     G   187
S 168     I   188
P 169     V   189
T 173     V   196
I 174     G   197
A 175     A   198
T 176     A   199
D 177     Y   200
A 178     K   201
A 179     F   202
D 180     N   203
S 181     D   204
V 182     A   205
V 183     G   206
T 184     T   207
N 185     V   208
M 186     G   209
I 187     L   210
L 188     N   211
F 189     W   212
V 190     Y   213
G 191     D   214
S 192     N   215
N 193     G   216
D 200     L   217
N 201     S   218
TER
END

