
PFRMAT AL
TARGET T0108
AUTHOR 4216-9015-4014
REMARK Predictor remarks
METHOD CASP4 submission
METHOD 
METHOD Work by Kelley LA, MacCallum RM & Sternberg MJE
METHOD Biomolecular Modelling Laboratory
METHOD Imperial Cancer Research Fund
METHOD 44 Lincoln's Inn Fields
METHOD London WC2A 3PX, England 
METHOD Tel +44-(0)20-7269-3565 / 3242
METHOD FAX +44-(0)20-7269-3534
METHOD
METHOD Using the results from the 3D-PSSM server:
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD 
METHOD We selected the superfamily found at rank 1 with 70% confidence
METHOD but chose the rank 2 template (50% confidence) as the secondary
METHOD structure elements appeared a better match.
METHOD 
METHOD The alignment has been manually adjusted to preserve 
METHOD the hydrophobic core and the continuity of the secondary 
METHOD structure elements.
METHOD 

MODEL 1
PARENT 1cx1_A
Q    6 A 1
Y    7 S 2
V    8 L 3
R    9 D 4
A   10 S 5
R   11 E 6
I   12 V 7
K   13 E 8
G   14 L 9
A   15 L 10
Y   16 P 11
Y   17 H 12
A   18 T 13
N   26 S 14
Q   27 F 15
P   28 A 16
T   29 E 17
A   30 S 18
P   31 L 19
K   32 G 20
D   33 P 21
F   34 W 22
S   35 S 23
S   36 L 24
G   37 Y 25
F   38 G 26
W   39 T 27
D   40 S 28
A   59 E 29
I   60 P 30
N   61 V 31
V   62 F 32
E   63 A 33
N   64 D 34
N   67 G 35
A   68 R 36
L   69 M 37
K   70 C 38
I   71 V 39
S   72 D 40
N   73 L 41
L   74 P 42
N   75 G 43
S   76 G 44
S   83 Q 45
E   84 G 46
G   85 N 47
N   86 P 48
F   87 W 49
W   88 D 50
A   89 A 51
N   90 G 52
V   91 L 53
R   92 V 54
I   93 Y 55
S   94 N 56
G   99 G 57
Q  100 V 58
S  101 P 59
I  102 V 60
N  103 G 61
I  104 E 62
Y  105 G 63
G  106 E 64
D  107 S 65
T  108 Y 66
K  109 V 67
L  110 L 68
T  111 S 69
M  112 F 70
D  113 T 71
V  114 A 72
I  115 S 73
A  116 A 74
P  117 T 75
T  118 P 76
P  119 D 77
V  120 M 78
N  121 P 79
V  122 V 80
S  123 R 81
I  124 V 82
A  125 L 83
A  126 V 84
I  127 G 85
P  128 E 86
Q  129 G 87
S  130 G 88
N  137 G 89
P  138 A 90
T  139 Y 91
R  140 R 92
A  141 T 93
R  142 A 94
I  143 F 95
V  144 E 96
W  145 Q 97
T  146 G 98
N  147 S 99
N  148 A 100
F  149 P 101
V  150 L 102
A  151 T 103
Q  152 G 104
T  153 E 105
T  156 P 106
Y  157 A 107
K  158 T 108
A  159 R 109
T  160 E 110
L  161 Y 111
T  162 A 112
I  163 F 113
S  164 T 114
T  165 S 115
N  166 N 116
D  167 L 117
S  168 T 118
P  169 F 119
N  170 P 120
F  171 P 121
N  172 D 122
T  173 G 123
V  182 D 124
V  183 A 125
T  184 P 126
N  185 G 127
M  186 Q 128
I  187 V 129
L  188 A 130
F  189 F 131
V  190 H 132
G  191 L 133
S  192 G 134
N  193 K 135
S  194 A 136
D  195 Y 139
N  196 E 140
I  197 F 141
S  198 C 142
L  199 I 143
D  200 S 144
N  201 Q 145
I  202 V 146
K  203 S 147
F  204 L 148
T  205 T 149
K  206 T 150
TER
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