
PFRMAT AL
TARGET T0108
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1cx1_A
T   19 A 1
P   20 S 2
V   21 L 3
D   22 D 4
P   23 S 5
V   24 E 6
T   25 V 7
N   26 E 8
Q   27 L 9
F   34 L 10
S   35 P 11
S   36 H 12
G   37 T 13
D   40 S 14
F   41 F 15
N   42 A 16
D   43 E 17
G   44 S 18
T   45 L 19
T   46 G 20
Q   47 P 21
G   48 W 22
F   49 S 23
G   50 L 24
V   51 Y 25
N   52 G 26
P   53 T 27
D   54 S 28
S   55 E 29
P   56 P 30
N   61 V 31
V   62 F 32
E   63 A 33
N   64 D 34
N   67 G 35
A   68 R 36
L   69 M 37
K   70 C 38
I   71 V 39
S   72 D 40
L   74 L 41
N   75 P 42
S   76 G 43
K   77 G 44
G   78 Q 45
S   79 G 46
N   80 N 47
D   81 P 48
W   88 W 49
N   90 D 50
V   91 A 51
R   92 G 52
I   93 L 53
S   94 V 54
A   95 Y 55
D   96 N 56
S  101 G 57
I  102 V 58
N  103 P 59
I  104 V 60
Y  105 G 61
G  106 G 63
D  107 E 64
T  108 S 65
K  109 V 67
L  110 L 68
T  111 S 69
M  112 F 70
D  113 T 71
V  114 A 72
I  115 S 73
A  116 A 74
P  117 T 75
T  118 P 76
P  119 D 77
V  120 M 78
N  121 P 79
V  122 V 80
S  123 R 81
A  125 V 82
A  126 L 83
I  127 V 84
P  128 G 85
Q  129 E 86
S  130 G 87
S  131 G 88
H  133 G 89
G  134 A 90
W  135 Y 91
G  136 R 92
N  137 T 93
R  140 A 94
A  141 F 95
R  142 E 96
I  143 Q 97
V  144 G 98
W  145 S 99
F  149 A 100
V  150 P 101
A  151 L 102
Q  152 T 103
T  153 G 104
D  154 E 105
G  155 P 106
T  156 A 107
K  158 T 108
A  159 R 109
T  160 E 110
L  161 Y 111
T  162 A 112
I  163 F 113
N  170 T 114
F  171 S 115
N  172 N 116
T  173 L 117
I  174 T 118
A  175 F 119
T  176 P 120
D  177 P 121
A  178 D 122
A  179 G 123
D  180 D 124
S  181 A 125
V  182 P 126
V  183 G 127
T  184 Q 128
N  185 V 129
M  186 A 130
I  187 F 131
L  188 H 132
F  189 L 133
V  190 G 134
G  191 K 135
S  192 A 136
N  193 G 137
S  194 A 138
D  195 Y 139
N  196 E 140
I  197 F 141
S  198 C 142
L  199 I 143
D  200 S 144
N  201 Q 145
I  202 V 146
K  203 S 147
F  204 L 148
T  205 T 149
K  206 T 150
TER
END

