
PFRMAT AL
TARGET T0108
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1abr_B
Q  47    Q 176
G  48    Q 177
F  49    W 178
G  50    A 179
V  51    L 180
N  52    Y 181
P  53    T 182
D  54    D 183
S  55    G 184
P  56    S 185
I  57    I 186
T  58    R 187
A  59    S 188
V  62    V 189
E  63    Q 190
N  64    N 191
A  65    T 192
N  66    N 193
N  67    N 194
A  68    C 195
L  69    L 196
K  70    T 197
S  72    S 198
N  73    K 199
L  74    D 200
N  75    H 201
S  76    K 202
K  77    Q 203
G  78    G 204
S  79    S 205
N  80    T 206
D  81    I 207
L  82    L 208
S  83    L 209
E  84    M 210
G  85    G 211
N  86    N 214
F  87    G 215
W  88    W 216
A  89    A 217
N  90    S 218
V  91    Q 219
R  92    R 220
I  93    W 221
S  94    V 222
A  95    F 223
D  96    K 224
I  97    N 225
W  98    D 226
G  99    G 227
Q 100    S 228
S 101    I 229
I 102    Y 230
N 103    S 231
I 104    L 232
Y 105    Y 233
G 106    D 234
D 107    D 235
L 110    M 236
T 111    V 237
M 112    M 238
D 113    D 239
V 114    V 240
I 115    K 241
A 116    G 242
P 117    S 243
T 118    D 244
P 119    P 245
V 120    S 246
N 121    L 247
V 122    K 248
S 123    Q 249
I 124    I 250
A 125    I 251
A 126    L 252
I 127    W 253
P 128    P 254
Q 129    Y 255
S 130    T 256
TER
END


