
PFRMAT AL
TARGET T0108
AUTHOR 5505-7671-7042
REMARK 
REMARK It seems that t0108 consists of two similar domains.
REMARK 
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  5
PARENT 1mvm_A
A   3    G 372
S   4    S 373
G   5    V 374
Q   6    R 375
Y   7    Y 376
V   8    S 377
R   9    Y 378
A  10    G 379
R  11    K 380
I  12    Q 381
K  13    H 382
G  14    G 383
A  15    E 384
Y  16    N 385
Y  17    W 386
A  18    A 387
T  19    A 388
P  20    H 389
D  22    G 390
P  23    P 391
V  24    A 392
T  25    P 393
N  26    E 394
Q  27    R 395
P  28    Y 396
T  29    T 397
A  30    W 398
P  31    D 399
K  32    E 400
D  33    N 402
F  34    F 403
S  35    G 404
S  36    S 405
G  37    G 406
F  38    R 407
D  40    D 408
F  41    T 409
N  42    R 410
D  43    D 411
G  44    G 412
T  45    F 413
T  46    I 414
Q  47    Q 415
G  48    S 416
F  49    A 417
G  50    P 418
V  51    L 419
N  52    V 420
P  53    V 421
D  54    P 422
S  55    P 423
P  56    P 424
I  57    L 425
T  58    N 426
A  59    G 427
I  60    I 428
V  62    L 429
E  63    T 430
N  64    N 431
A  65    A 432
N  66    N 433
N  67    N 439
A  68    D 440
L  69    I 441
K  70    H 442
I  71    F 443
S  72    S 444
N  73    N 445
L  74    V 446
N  75    N 448
S  76    S 449
K  77    Y 450
G  78    G 451
S  79    P 452
L  82    L 453
S  83    T 454
E  84    T 455
G  85    F 456
N  86    S 457
F  87    H 458
W  88    P 459
A  89    S 460
N  90    P 461
V  91    V 462
R  92    Y 463
I  93    P 464
S  94    Q 465
A  95    G 466
D  96    Q 467
I  97    I 468
W  98    W 469
G  99    D 470
Q 100    K 471
S 101    E 472
I 102    L 473
N 103    D 474
I 104    L 475
D 107    E 476
T 108    H 477
K 109    K 478
L 110    P 479
T 111    R 480
M 112    L 481
D 113    H 482
V 114    I 483
I 115    T 484
A 116    A 485
P 117    P 486
T 118    A 493
P 119    P 494
V 120    G 495
N 121    Q 496
V 122    M 497
S 123    L 498
I 124    V 499
A 125    R 500
A 126    L 501
I 127    G 502
P 128    P 503
Q 129    N 504
S 130    T 506
S 131    D 507
T 132    Q 508
H 133    Y 509
G 134    D 510
W 135    P 511
G 136    N 512
N 137    G 513
P 138    A 514
T 139    T 515
R 140    L 516
A 141    S 517
R 142    R 518
I 143    I 519
V 144    V 520
W 145    T 521
T 146    Y 522
N 147    G 523
N 148    T 524
F 149    F 525
V 150    F 526
A 151    W 527
Q 152    K 528
T 153    G 529
D 154    K 530
G 155    L 531
T 156    T 532
Y 157    M 533
K 158    R 534
A 159    A 535
T 160    K 536
L 161    L 537
T 162    R 538
I 163    A 539
S 164    N 540
T 165    T 541
N 166    T 542
D 167    W 543
S 168    N 544
P 169    P 545
N 170    V 546
F 171    Y 547
N 172    Q 548
T 173    V 549
I 174    S 550
A 175    V 551
T 176    E 552
D 177    D 553
A 178    N 554
A 179    G 555
D 180    N 556
S 181    S 557
TER
END


