
PFRMAT SS
TARGET T0108
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.96
G C 0.80
A C 0.64
S C 0.16
G H 0.22
Q H 0.50
Y H 0.43
V H 0.54
R H 0.52
A H 0.32
R H 0.17
I H 0.14
K C 0.01
G C 0.58
A C 0.27
Y C 0.11
Y C 0.08
A C 0.20
T C 0.63
P C 0.75
V C 0.44
D C 0.65
P C 0.58
V C 0.67
T C 0.72
N C 0.82
Q C 0.88
P C 0.86
T C 0.83
A C 0.78
P C 0.04
K H 0.01
D H 0.06
F C 0.37
S C 0.58
S C 0.32
G E 0.50
F E 0.51
W E 0.63
D E 0.14
F C 0.28
N C 0.63
D C 0.88
G C 0.87
T C 0.76
T E 0.74
Q E 0.50
G C 0.65
F C 0.70
G C 0.62
V C 0.70
N C 0.88
P C 0.88
D C 0.88
S C 0.86
P C 0.87
I C 0.56
T C 0.24
A E 0.39
I E 0.75
N E 0.88
V E 0.61
E E 0.01
N C 0.51
A C 0.74
N C 0.88
N C 0.89
A C 0.07
L E 0.13
K E 0.25
I E 0.38
S E 0.30
N C 0.29
L C 0.38
N C 0.50
S C 0.59
K C 0.65
G C 0.73
S C 0.73
N C 0.68
D C 0.65
L C 0.75
S C 0.64
E C 0.67
G C 0.67
N C 0.48
F C 0.11
W E 0.18
A E 0.16
N E 0.16
V E 0.41
R E 0.71
I E 0.87
S E 0.20
A E 0.06
D C 0.43
I C 0.43
W C 0.30
G C 0.69
Q C 0.65
S C 0.28
I C 0.29
N C 0.09
I E 0.36
Y E 0.27
G E 0.13
D C 0.40
T C 0.26
K E 0.17
L E 0.49
T E 0.64
M E 0.74
D E 0.75
V E 0.83
I E 0.62
A C 0.27
P C 0.78
T C 0.92
P C 0.88
V C 0.45
N E 0.14
V E 0.49
S E 0.87
I E 0.79
A E 0.83
A E 0.14
I C 0.28
P C 0.19
Q C 0.66
S C 0.80
S C 0.79
T C 0.69
H C 0.60
G C 0.68
W C 0.58
G C 0.55
N C 0.85
P C 0.44
T C 0.31
R C 0.02
A E 0.43
R E 0.75
I E 0.85
V E 0.66
W C 0.68
T C 0.36
N C 0.41
N C 0.41
F C 0.45
V E 0.36
A E 0.12
Q C 0.55
T C 0.74
D C 0.90
G C 0.79
T E 0.18
Y E 0.61
K E 0.92
A E 0.93
T E 0.96
L E 0.95
T E 0.95
I E 0.80
S C 0.50
T C 0.70
N C 0.77
D C 0.79
S C 0.88
P C 0.80
N C 0.78
F H 0.10
N H 0.30
T H 0.29
I H 0.09
A C 0.26
T C 0.28
D C 0.78
A C 0.67
A C 0.75
D C 0.85
S C 0.79
V E 0.15
V E 0.22
T E 0.29
N E 0.62
M E 0.89
I E 0.91
L E 0.96
F E 0.96
V E 0.75
G C 0.14
S C 0.78
N C 0.88
S C 0.64
D C 0.49
N E 0.66
I E 0.90
S E 0.84
L E 0.67
D C 0.21
N C 0.53
I E 0.68
K E 0.82
F E 0.72
T C 0.10
K C 0.96
END

