
PFRMAT AL
TARGET T0108
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.54 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1c28a
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1c28_A
I  12     M   113
K  13     Y   114
G  14     R   115
A  15     S   116
Y  16     A   117
Y  17     F   118
A  18     S   119
T  19     V   120
P  20     G   121
V  21     L   122
D  22     E   123
P  23     T   124
V  24     R   125
T  25     V   126
N  26     T   127
P  28     P   129
T  29     N   130
A  30     V   131
P  31     P   132
K  32     I   133
D  33     R   134
F  34     F   135
S  35     T   136
S  36     K   137
G  37     I   138
F  38     F   139
W  39     Y   140
N  75     N   141
S  76     Q   142
K  77     Q   143
G  78     N   144
S  79     H   145
N  80     Y   146
D  81     D   147
L  82     G   148
S  83     S   149
E  84     T   150
G  85     G   151
N  86     K   152
F  87     F   153
W  88     Y   154
A  89     C   155
N  90     N   156
V  91     I   157
R  92     P   158
G 106     G   159
D 107     L   160
T 108     Y   161
K 109     Y   162
L 110     F   163
T 111     S   164
M 112     Y   165
D 113     H   166
V 114     I   167
I 115     T   168
A 116     V   169
P 117     Y   170
T 118     M   171
P 119     K   172
N 121     D   173
V 122     V   174
S 123     K   175
I 124     V   176
A 125     S   177
A 126     L   178
I 127     F   179
P 128     K   180
Q 129     K   181
S 130     D   182
R 140     K   183
A 141     A   184
R 142     V   185
I 143     L   186
V 144     F   187
W 145     T   188
T 146     Y   189
N 147     D   190
N 148     Q   191
F 149     Y   192
V 150     Q   193
A 151     N   196
Q 152     V   197
T 153     D   198
D 154     Q   199
G 155     A   200
T 156     S   201
Y 157     G   202
K 158     S   203
A 159     V   204
T 160     L   205
L 161     L   206
T 162     H   207
I 163     L   208
S 164     E   209
T 165     V   210
N 166     G   211
D 167     D   212
S 168     Q   213
P 169     V   214
N 170     W   215
F 171     L   216
N 172     Q   217
T 173     V   218
I 174     Y   219
A 175     A   229
T 176     D   230
D 177     N   231
A 178     V   232
A 179     N   233
D 180     D   234
S 181     S   235
V 182     T   236
V 183     F   237
T 184     T   238
N 185     G   239
M 186     F   240
I 187     L   241
L 188     L   242
F 189     Y   243
V 190     H   244
G 191     D   245
S 192     T   246
TER
END

