
PFRMAT AL
TARGET T0108
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1ulo
D   54 A 1
S   55 S 2
P   56 P 3
I   57 I 4
T   58 G 5
A   59 E 6
I   60 G 7
N   61 T 8
V   62 F 9
E   63 D 10
N   64 D 11
A   65 G 12
N   66 P 13
N   67 E 14
A   68 G 15
L   69 W 16
K   70 V 17
I   71 A 18
S   72 Y 19
N   73 G 20
S   76 T 21
K   77 D 22
G   78 G 23
S   79 P 24
N   80 L 25
D   81 D 26
L   82 T 27
S   83 S 28
E   84 T 29
G   85 G 30
N   86 A 31
F   87 L 32
W   88 C 33
A   89 V 34
N   90 A 35
V   91 V 36
R   92 P 37
I   93 A 38
S   94 G 39
A   95 S 40
D   96 A 41
I   97 Q 42
W   98 Y 43
G   99 G 44
Q  100 N 50
S  101 G 51
I  102 V 52
N  103 A 53
I  104 I 54
Y  105 E 55
G  106 G 57
D  107 T 58
T  108 T 59
K  109 T 61
L  110 L 62
T  111 R 63
M  112 Y 64
D  113 T 65
V  114 A 66
I  115 T 67
A  116 A 68
P  117 S 69
T  118 T 70
P  119 D 71
V  120 V 72
N  121 T 73
V  122 V 74
I  124 R 75
A  125 A 76
A  126 L 77
I  127 V 78
P  128 G 79
Q  129 Q 80
S  130 N 81
S  131 G 82
T  132 A 83
G  134 P 84
W  135 Y 85
G  136 G 86
N  137 T 87
P  138 V 88
T  139 L 89
R  140 D 90
A  141 T 91
R  142 S 92
I  143 P 93
V  144 A 94
W  145 L 95
T  146 T 96
N  147 S 97
T  153 E 98
D  154 P 99
G  155 R 100
T  156 Q 101
Y  157 V 102
K  158 T 103
A  159 E 104
T  160 T 105
L  161 F 106
T  162 T 107
I  163 A 108
S  164 S 109
T  165 Y 112
N  166 P 113
D  167 A 114
S  168 T 115
P  169 P 116
N  170 A 117
F  171 A 118
N  172 D 119
T  173 D 120
I  174 I 125
A  175 A 126
T  176 F 127
D  177 Q 128
A  178 L 129
A  179 G 130
D  180 G 131
S  181 F 132
V  182 S 133
V  183 A 134
T  184 D 135
N  185 A 136
M  186 W 137
I  187 T 138
L  188 L 139
F  189 C 140
V  190 L 141
D  195 D 142
N  196 D 143
I  197 V 144
S  198 A 145
L  199 L 146
D  200 D 147
N  201 E 149
I  202 V 150
K  203 E 151
F  204 L 152
TER
END

