
PFRMAT AL
TARGET T0108
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1qfh_A
T   25 K 646
N   26 P 647
Q   27 A 648
P   28 P 649
T   29 S 650
A   30 A 651
P   31 E 652
K   32 H 653
D   33 S 654
F   34 Y 655
S   35 P 669
S   36 A 670
G   37 E 671
F   38 F 672
W   39 T 673
D   40 I 674
F   41 F 675
N   42 A 676
D   43 V 677
G   44 D 678
T   45 T 679
T   46 K 680
Q   47 G 681
G   48 V 682
F   49 A 683
G   50 R 684
V   51 T 685
N   52 D 686
P   53 G 687
D   54 G 688
S   55 D 689
P   56 P 690
I   57 F 691
A   59 E 692
I   60 V 693
N   61 A 694
V   62 I 695
E   63 N 696
N   64 G 697
A   65 P 698
N   66 D 699
N   67 G 700
K   70 L 701
I   71 V 702
S   72 V 703
N   73 D 704
L   74 A 705
N   75 K 706
S   76 V 707
K   77 T 708
G   78 D 709
S   79 N 710
N   80 N 711
D   81 D 712
L   82 G 713
S   83 V 723
E   84 E 724
G   85 G 725
N   86 N 726
F   87 Y 727
W   88 N 728
A   89 V 729
N   90 N 730
V   91 V 731
R   92 T 732
I   93 L 733
S   94 R 734
A   95 G 735
D   96 N 736
I   97 I 738
W   98 K 739
G   99 N 740
Q  100 M 741
S  101 P 742
I  102 I 743
N  103 D 744
I  104 I 748
Y  105 E 749
G  106 G 750
D  107 A 751
T  108 E 754
K  109 D 755
L  110 S 756
T  111 S 757
M  112 F 758
D  113 G 759
V  114 S 760
I  115 F 761
A  116 T 762
V  120 F 763
N  121 T 764
V  122 V 765
S  123 A 766
A  125 A 767
A  126 K 768
I  127 N 769
P  128 K 770
Q  129 K 771
S  130 G 772
S  131 E 773
T  132 V 774
H  133 K 775
G  134 T 776
W  135 Y 777
G  136 G 778
N  137 G 779
P  138 D 780
T  139 K 781
R  140 F 782
A  141 E 783
R  142 V 784
I  143 S 785
V  144 I 786
W  145 T 787
T  146 T 794
N  147 L 795
N  148 D 796
F  149 A 797
V  150 I 798
A  151 D 799
Q  152 N 800
T  153 Q 801
D  154 D 802
G  155 G 803
T  156 T 804
Y  157 Y 805
K  158 T 806
A  159 A 807
T  160 A 808
L  161 Y 809
T  162 S 810
I  163 L 811
S  164 V 812
T  165 G 813
N  166 N 814
D  167 F 817
S  168 S 818
P  169 T 819
N  170 G 820
F  171 V 821
N  172 K 822
T  173 L 823
I  174 N 824
A  175 G 825
T  176 K 826
D  177 H 827
A  178 I 828
A  179 E 829
D  180 G 830
S  181 S 831
V  182 P 832
V  183 F 833
T  184 K 834
N  185 Q 835
M  186 V 836
I  187 L 837
L  188 G 838
F  189 N 839
V  190 P 840
G  191 G 841
S  192 K 843
N  193 N 844
S  194 P 845
D  195 E 846
N  196 V 847
I  197 K 848
S  198 S 849
L  199 F 850
D  200 T 851
N  201 T 852
I  202 T 853
K  203 R 854
F  204 T 855
T  205 A 856
K  206 N 857
TER
END

