
PFRMAT AL
TARGET T0108
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1vmo_A
R    9 R 1
A   10 T 2
R   11 R 3
I   12 E 4
K   13 Y 5
G   14 T 6
A   15 S 7
Y   16 V 8
Y   17 I 9
A   18 T 10
T   19 V 11
P   20 P 12
P   23 N 13
V   24 G 14
T   25 G 15
N   26 H 16
Q   27 W 17
P   28 G 18
T   29 K 19
A   30 C 26
P   31 H 27
K   32 S 28
D   33 G 29
F   34 Y 30
S   35 A 31
S   36 N 32
G   37 G 33
F   38 F 34
W   39 A 35
D   40 L 36
F   41 K 37
N   42 V 38
D   43 E 39
G   44 P 40
T   45 S 41
Q   47 Q 42
G   48 F 43
F   49 G 44
G   50 R 45
P   53 D 46
D   54 D 47
S   55 T 48
P   56 A 49
I   57 L 50
T   58 N 51
A   59 G 52
I   60 I 53
N   61 R 54
V   62 L 55
E   63 R 56
N   64 C 57
A   65 L 58
N   66 D 59
N   67 G 60
A   68 S 61
L   69 V 62
K   70 I 63
I   71 E 64
S   72 S 65
N   73 L 66
L   74 V 67
N   75 G 68
S   76 K 69
K   77 W 70
G   78 G 71
S   79 S 75
N   80 F 76
D   81 L 77
L   82 V 78
S   83 C 79
E   84 P 80
G   85 T 81
N   86 G 82
F   87 Y 83
W   88 L 84
A   89 V 85
N   90 S 86
V   91 F 87
R   92 S 88
I   93 L 89
S   94 R 90
A   95 S 91
D   96 E 92
I   97 K 93
W   98 S 94
G   99 Q 95
Q  100 G 96
S  101 G 97
I  102 G 98
N  103 D 99
I  104 D 100
Y  105 T 101
G  106 A 102
P  119 A 103
V  120 N 104
N  121 N 105
V  122 I 106
S  123 Q 107
I  124 F 108
A  125 R 109
A  126 C 110
I  127 S 111
P  128 D 112
Q  129 E 113
S  130 A 114
S  131 V 115
T  132 L 116
H  133 V 117
G  134 G 118
W  135 D 119
G  136 G 120
N  137 L 121
P  138 S 122
T  139 W 123
R  140 G 124
A  141 R 125
R  142 F 126
I  143 G 127
V  144 P 128
W  145 W 129
T  146 S 130
N  147 K 131
N  148 R 132
F  149 C 133
V  150 K 134
A  151 I 135
Y  157 C 136
K  158 G 137
A  159 L 138
T  160 Q 139
L  161 T 140
T  162 K 141
I  163 V 142
S  164 E 143
T  165 S 144
N  166 P 145
D  167 Q 146
S  168 G 147
P  169 L 148
T  176 R 149
D  177 D 150
D  180 D 151
S  181 T 152
V  182 A 153
V  183 L 154
T  184 N 155
N  185 N 156
M  186 V 157
I  187 R 158
L  188 F 159
F  189 F 160
V  190 C 161
G  191 C 162
S  192 K 163
TER
END

