
PFRMAT AL
TARGET T0108
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1srd_A
W  88    T  30
A  89    V  31
N  90    N  32
V  91    V  33
R  92    R  34
I  93    I  35
S  94    S  36
A  95    G  37
D  96    L  38
I  97    A  39
W  98    P  40
G  99    G  41
Q 100    K  42
S 101    H  43
I 102    L  47
N 103    H  48
I 104    E  49
Y 105    F  50
G 106    G  51
D 107    D  52
T 108    T  53
T 111    T  54
M 112    N  55
D 113    G  56
V 114    C  57
I 115    M  58
A 116    S  59
P 117    T  60
T 118    G  61
P 119    P  62
V 120    F  64
N 121    N  65
P 128    P  66
Q 129    D  67
S 130    K  68
S 131    K  69
T 132    T  70
H 133    H  71
G 134    G  72
W 135    A  73
G 136    P  74
N 137    E  75
I 143    A  81
V 144    G  82
W 145    D  83
T 146    L  84
N 147    G  85
N 148    N  86
F 149    I  87
V 150    V  88
A 151    A  89
Q 152    N  90
T 153    T  91
D 154    D  92
G 155    G  93
T 156    V  94
Y 157    A  95
K 158    E  96
A 159    A  97
T 160    T  98
L 161    I  99
T 162    V 100
TER
END


