
PFRMAT AL
TARGET T0109
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1ash
L   55 A 0
N   56 N 1
K   57 K 2
M   58 T 3
N   59 R 4
D   60 E 5
W   61 L 6
C   62 C 7
Q   63 M 8
K   64 K 9
T   65 S 10
H   66 H 13
S   67 A 14
E   68 K 15
N   69 V 16
G   70 D 17
L   71 T 18
I   72 S 19
E   73 N 20
R   74 E 21
I   75 A 22
K   76 R 23
E   82 Q 24
R   83 D 25
A   84 G 26
A   85 I 27
E   86 D 28
L   87 L 29
Q   88 Y 30
T   89 K 31
L   90 H 32
D   91 M 33
F   92 F 34
L   93 L 40
K   94 R 41
K   95 K 42
W   96 Y 43
V   97 F 44
K   99 K 45
G  100 S 46
A  101 R 47
S  102 E 48
P  103 E 49
I  104 Y 50
C  105 T 51
G  106 A 52
N  107 E 53
S  108 D 54
I  109 V 55
A  110 Q 56
Q  111 N 57
D  112 D 58
K  113 P 59
R  114 F 60
F  115 F 61
L  116 F 85
V  117 N 86
K  118 A 87
Y  119 Y 88
M  120 T 89
P  121 R 90
D  122 E 91
L  123 L 92
A  124 L 93
D  125 D 94
Y  126 R 95
H  128 H 96
Y  129 A 97
R  130 R 98
H  131 H 102
L  132 M 103
D  133 P 104
V  134 P 105
S  135 E 106
T  136 V 107
L  137 W 108
K  138 T 109
E  139 D 110
L  140 F 111
W  144 W 112
K  145 K 113
I  148 L 114
L  149 F 115
E  150 E 116
G  151 E 117
F  152 Y 118
K  153 L 119
K  154 G 120
E  155 K 121
N  156 K 122
T  157 T 123
H  158 T 124
L  159 L 125
A  160 D 126
D  162 E 127
D  163 P 128
I  164 T 129
R  165 K 130
E  166 Q 131
S  167 A 132
I  168 W 133
K  169 H 134
E  170 E 135
L  171 I 136
A  172 G 137
Y  173 E 139
Y  174 F 140
R  175 A 141
E  176 K 142
H  177 E 143
F  178 I 144
M  179 N 145
K  180 K 146
TER
END

