
PFRMAT TS 
TARGET T0109
AUTHOR 1395-2891-7461
REMARK
REMARK Ugo Bastolla, Jochen Farwer and Ernst-Walter Knapp
REMARK Freie Universitaet Berlin, Institute of Crystallography
REMARK
METHOD For the given sequence and all sequence fragments with a length
METHOD of at least 35 residues decoy structures were generated by
METHOD threading using a set of 1015 proteins (Hobohm U, Sander C.
METHOD Enlarged representative set of protein structure.
METHOD Protein Sci 1994; 3: 522-524. List available at
METHOD ftp://ftp.embl-heidelberg.de/pub/databases/
METHOD protein_extras/pdb_select/recent.pdb_select).
METHOD For all fragments the decoy structure of lowest energy was determined
METHOD using the energy function described in (Bastolla U, Vendruscolo M,
METHOD Knapp EW.
METHOD A statistical mechanical method to optimize energy functions for
METHOD protein folding.
METHOD Proc Natl Acad Sci USA 2000, 97: 3977-3981).
METHOD The alpha values of all the lowest energy structures were calculated.
METHOD As a control secondary structure was predicted using NNSSP
METHOD (Salamov A.A., Solovyev V.V.
METHOD Prediction of protein secondary sturcture by combining
METHOD nearest-neighbor algorithms and multiple sequence alignments.
METHOD J.Mol.Biol.,1995, 247, 11-15.).
METHOD The most stable 43 residue fragment was chosen for the prediction.
MODEL 1
PARENT 1aq6_A
ATOM      1  N   ALA   85       47.041  -0.351  -0.531  1.00  0.00          N
ATOM      2  CA  ALA   85       48.252   0.105   0.155  1.00  0.00          C
ATOM      3  C   ALA   85       47.794   0.688   1.508  1.00  0.00          C
ATOM      4  O   ALA   85       46.589   0.852   1.735  1.00  0.00          O
ATOM      5  N   GLU   86       48.738   1.078   2.355  1.00  0.00          N
ATOM      6  CA  GLU   86       48.446   1.741   3.617  1.00  0.00          C
ATOM      7  C   GLU   86       49.267   3.024   3.719  1.00  0.00          C
ATOM      8  O   GLU   86       50.341   3.146   3.113  1.00  0.00          O
ATOM      9  N   LEU   87       48.770   4.031   4.437  1.00  0.00          N
ATOM     10  CA  LEU   87       49.584   5.249   4.633  1.00  0.00          C
ATOM     11  C   LEU   87       50.905   4.779   5.223  1.00  0.00          C
ATOM     12  O   LEU   87       50.933   3.785   5.978  1.00  0.00          O
ATOM     13  N   GLN   88       52.014   5.435   4.911  1.00  0.00          N
ATOM     14  CA  GLN   88       52.088   6.630   4.124  1.00  0.00          C
ATOM     15  C   GLN   88       52.488   6.473   2.654  1.00  0.00          C
ATOM     16  O   GLN   88       53.168   7.328   2.074  1.00  0.00          O
ATOM     17  N   THR   89       52.115   5.364   2.051  1.00  0.00          N
ATOM     18  CA  THR   89       52.377   5.144   0.612  1.00  0.00          C
ATOM     19  C   THR   89       51.694   6.282  -0.130  1.00  0.00          C
ATOM     20  O   THR   89       50.555   6.650   0.174  1.00  0.00          O
ATOM     21  N   LEU   90       52.340   6.884  -1.120  1.00  0.00          N
ATOM     22  CA  LEU   90       51.766   8.011  -1.846  1.00  0.00          C
ATOM     23  C   LEU   90       50.429   7.738  -2.506  1.00  0.00          C
ATOM     24  O   LEU   90       49.565   8.638  -2.592  1.00  0.00          O
ATOM     25  N   ASP   91       50.141   6.495  -2.895  1.00  0.00          N
ATOM     26  CA  ASP   91       48.881   6.181  -3.563  1.00  0.00          C
ATOM     27  C   ASP   91       47.711   6.354  -2.614  1.00  0.00          C
ATOM     28  O   ASP   91       46.605   6.642  -3.065  1.00  0.00          O
ATOM     29  N   PHE   92       47.986   6.198  -1.289  1.00  0.00          N
ATOM     30  CA  PHE   92       46.890   6.448  -0.359  1.00  0.00          C
ATOM     31  C   PHE   92       46.509   7.904  -0.402  1.00  0.00          C
ATOM     32  O   PHE   92       45.310   8.225  -0.498  1.00  0.00          O
ATOM     33  N   LEU   93       47.408   8.871  -0.410  1.00  0.00          N
ATOM     34  CA  LEU   93       47.121  10.293  -0.448  1.00  0.00          C
ATOM     35  C   LEU   93       46.559  10.756  -1.808  1.00  0.00          C
ATOM     36  O   LEU   93       45.822  11.738  -1.893  1.00  0.00          O
ATOM     37  N   LYS   94       46.857  10.024  -2.861  1.00  0.00          N
ATOM     38  CA  LYS   94       46.369  10.284  -4.226  1.00  0.00          C
ATOM     39  C   LYS   94       44.854  10.188  -4.312  1.00  0.00          C
ATOM     40  O   LYS   94       44.211  10.893  -5.107  1.00  0.00          O
ATOM     41  N   LYS   95       44.239   9.339  -3.471  1.00  0.00          N
ATOM     42  CA  LYS   95       42.793   9.250  -3.411  1.00  0.00          C
ATOM     43  C   LYS   95       42.086  10.551  -3.100  1.00  0.00          C
ATOM     44  O   LYS   95       40.941  10.712  -3.553  1.00  0.00          O
ATOM     45  N   TRP   96       42.646  11.492  -2.359  1.00  0.00          N
ATOM     46  CA  TRP   96       42.014  12.753  -2.044  1.00  0.00          C
ATOM     47  C   TRP   96       41.582  13.488  -3.334  1.00  0.00          C
ATOM     48  O   TRP   96       40.389  13.778  -3.493  1.00  0.00          O
ATOM     49  N   VAL   97       42.511  13.722  -4.246  1.00  0.00          N
ATOM     50  CA  VAL   97       42.210  14.363  -5.523  1.00  0.00          C
ATOM     51  C   VAL   97       41.182  13.537  -6.297  1.00  0.00          C
ATOM     52  O   VAL   97       40.162  14.091  -6.736  1.00  0.00          O
ATOM     53  N   PRO   98       41.403  12.240  -6.425  1.00  0.00          N
ATOM     54  CA  PRO   98       40.473  11.381  -7.149  1.00  0.00          C
ATOM     55  C   PRO   98       39.048  11.579  -6.647  1.00  0.00          C
ATOM     56  O   PRO   98       38.142  11.909  -7.423  1.00  0.00          O
ATOM     57  N   LYS   99       38.829  11.383  -5.343  1.00  0.00          N
ATOM     58  CA  LYS   99       37.494  11.527  -4.779  1.00  0.00          C
ATOM     59  C   LYS   99       36.963  12.938  -4.719  1.00  0.00          C
ATOM     60  O   LYS   99       35.773  13.153  -5.006  1.00  0.00          O
ATOM     61  N   GLY  100       37.771  13.921  -4.337  1.00  0.00          N
ATOM     62  CA  GLY  100       37.280  15.260  -4.103  1.00  0.00          C
ATOM     63  C   GLY  100       37.394  16.265  -5.235  1.00  0.00          C
ATOM     64  O   GLY  100       36.758  17.314  -5.124  1.00  0.00          O
ATOM     65  N   ALA  101       38.259  16.029  -6.209  1.00  0.00          N
ATOM     66  CA  ALA  101       38.435  16.981  -7.303  1.00  0.00          C
ATOM     67  C   ALA  101       39.300  18.164  -6.932  1.00  0.00          C
ATOM     68  O   ALA  101       39.291  19.198  -7.627  1.00  0.00          O
ATOM     69  N   SER  102       40.027  18.091  -5.811  1.00  0.00          N
ATOM     70  CA  SER  102       40.889  19.188  -5.386  1.00  0.00          C
ATOM     71  C   SER  102       42.340  18.727  -5.455  1.00  0.00          C
ATOM     72  O   SER  102       42.631  17.540  -5.267  1.00  0.00          O
ATOM     73  N   PRO  103       43.254  19.643  -5.728  1.00  0.00          N
ATOM     74  CA  PRO  103       44.663  19.306  -5.831  1.00  0.00          C
ATOM     75  C   PRO  103       45.343  19.398  -4.472  1.00  0.00          C
ATOM     76  O   PRO  103       44.911  20.102  -3.562  1.00  0.00          O
ATOM     77  N   ILE  104       46.496  18.750  -4.362  1.00  0.00          N
ATOM     78  CA  ILE  104       47.247  18.709  -3.108  1.00  0.00          C
ATOM     79  C   ILE  104       47.397  20.051  -2.450  1.00  0.00          C
ATOM     80  O   ILE  104       47.082  20.160  -1.250  1.00  0.00          O
ATOM     81  N   CYS  105       47.751  21.111  -3.158  1.00  0.00          N
ATOM     82  CA  CYS  105       47.850  22.457  -2.643  1.00  0.00          C
ATOM     83  C   CYS  105       46.574  23.074  -2.093  1.00  0.00          C
ATOM     84  O   CYS  105       46.681  24.141  -1.465  1.00  0.00          O
ATOM     85  N   GLY  106       45.394  22.542  -2.329  1.00  0.00          N
ATOM     86  CA  GLY  106       44.137  23.102  -1.866  1.00  0.00          C
ATOM     87  C   GLY  106       43.588  22.324  -0.670  1.00  0.00          C
ATOM     88  O   GLY  106       42.443  22.499  -0.241  1.00  0.00          O
ATOM     89  N   ASN  107       44.402  21.386  -0.180  1.00  0.00          N
ATOM     90  CA  ASN  107       44.015  20.524   0.925  1.00  0.00          C
ATOM     91  C   ASN  107       44.783  20.827   2.209  1.00  0.00          C
ATOM     92  O   ASN  107       46.009  20.962   2.209  1.00  0.00          O
ATOM     93  N   SER  108       44.020  20.938   3.305  1.00  0.00          N
ATOM     94  CA  SER  108       44.703  21.038   4.603  1.00  0.00          C
ATOM     95  C   SER  108       44.544  19.627   5.184  1.00  0.00          C
ATOM     96  O   SER  108       43.410  19.211   5.388  1.00  0.00          O
ATOM     97  N   ILE  109       45.627  18.896   5.333  1.00  0.00          N
ATOM     98  CA  ILE  109       45.597  17.540   5.867  1.00  0.00          C
ATOM     99  C   ILE  109       45.847  17.573   7.384  1.00  0.00          C
ATOM    100  O   ILE  109       46.770  18.233   7.832  1.00  0.00          O
ATOM    101  N   ALA  110       44.998  16.898   8.153  1.00  0.00          N
ATOM    102  CA  ALA  110       45.070  16.970   9.614  1.00  0.00          C
ATOM    103  C   ALA  110       45.379  15.621  10.253  1.00  0.00          C
ATOM    104  O   ALA  110       44.655  14.647  10.045  1.00  0.00          O
ATOM    105  N   GLN  111       46.488  15.535  11.000  1.00  0.00          N
ATOM    106  CA  GLN  111       46.801  14.254  11.643  1.00  0.00          C
ATOM    107  C   GLN  111       47.566  14.463  12.955  1.00  0.00          C
ATOM    108  O   GLN  111       48.371  15.369  13.075  1.00  0.00          O
ATOM    109  N   ASP  112       47.332  13.556  13.887  1.00  0.00          N
ATOM    110  CA  ASP  112       48.096  13.514  15.136  1.00  0.00          C
ATOM    111  C   ASP  112       49.200  12.474  15.040  1.00  0.00          C
ATOM    112  O   ASP  112       49.996  12.286  15.986  1.00  0.00          O
ATOM    113  N   LYS  113       49.295  11.740  13.919  1.00  0.00          N
ATOM    114  CA  LYS  113       50.324  10.710  13.812  1.00  0.00          C
ATOM    115  C   LYS  113       51.523  11.184  13.012  1.00  0.00          C
ATOM    116  O   LYS  113       51.354  11.489  11.823  1.00  0.00          O
ATOM    117  N   ARG  114       52.698  11.246  13.613  1.00  0.00          N
ATOM    118  CA  ARG  114       53.900  11.707  12.950  1.00  0.00          C
ATOM    119  C   ARG  114       54.168  11.035  11.606  1.00  0.00          C
ATOM    120  O   ARG  114       54.538  11.769  10.669  1.00  0.00          O
ATOM    121  N   PHE  115       54.026   9.726  11.460  1.00  0.00          N
ATOM    122  CA  PHE  115       54.314   9.109  10.156  1.00  0.00          C
ATOM    123  C   PHE  115       53.356   9.609   9.070  1.00  0.00          C
ATOM    124  O   PHE  115       53.735   9.656   7.892  1.00  0.00          O
ATOM    125  N   LEU  116       52.120   9.893   9.445  1.00  0.00          N
ATOM    126  CA  LEU  116       51.069  10.340   8.544  1.00  0.00          C
ATOM    127  C   LEU  116       51.246  11.787   8.143  1.00  0.00          C
ATOM    128  O   LEU  116       51.027  12.219   6.996  1.00  0.00          O
ATOM    129  N   VAL  117       51.753  12.593   9.082  1.00  0.00          N
ATOM    130  CA  VAL  117       52.147  13.972   8.791  1.00  0.00          C
ATOM    131  C   VAL  117       53.257  13.961   7.750  1.00  0.00          C
ATOM    132  O   VAL  117       53.283  14.782   6.823  1.00  0.00          O
ATOM    133  N   LYS  118       54.221  13.048   7.889  1.00  0.00          N
ATOM    134  CA  LYS  118       55.343  12.932   6.972  1.00  0.00          C
ATOM    135  C   LYS  118       54.860  12.488   5.572  1.00  0.00          C
ATOM    136  O   LYS  118       55.287  13.064   4.563  1.00  0.00          O
ATOM    137  N   TYR  119       53.967  11.516   5.509  1.00  0.00          N
ATOM    138  CA  TYR  119       53.497  11.060   4.189  1.00  0.00          C
ATOM    139  C   TYR  119       52.706  12.163   3.493  1.00  0.00          C
ATOM    140  O   TYR  119       52.827  12.340   2.266  1.00  0.00          O
ATOM    141  N   MET  120       51.816  12.836   4.221  1.00  0.00          N
ATOM    142  CA  MET  120       50.999  13.905   3.674  1.00  0.00          C
ATOM    143  C   MET  120       51.860  15.052   3.170  1.00  0.00          C
ATOM    144  O   MET  120       51.647  15.585   2.052  1.00  0.00          O
ATOM    145  N   PRO  121       52.861  15.442   3.957  1.00  0.00          N
ATOM    146  CA  PRO  121       53.789  16.491   3.587  1.00  0.00          C
ATOM    147  C   PRO  121       54.554  16.065   2.323  1.00  0.00          C
ATOM    148  O   PRO  121       54.608  16.822   1.355  1.00  0.00          O
ATOM    149  N   ASP  122       55.090  14.862   2.318  1.00  0.00          N
ATOM    150  CA  ASP  122       55.764  14.256   1.176  1.00  0.00          C
ATOM    151  C   ASP  122       54.895  14.308  -0.085  1.00  0.00          C
ATOM    152  O   ASP  122       55.416  14.625  -1.168  1.00  0.00          O
ATOM    153  N   LEU  123       53.618  13.961   0.050  1.00  0.00          N
ATOM    154  CA  LEU  123       52.686  13.997  -1.072  1.00  0.00          C
ATOM    155  C   LEU  123       52.411  15.410  -1.576  1.00  0.00          C
ATOM    156  O   LEU  123       52.166  15.559  -2.788  1.00  0.00          O
ATOM    157  N   ALA  124       52.483  16.454  -0.773  1.00  0.00          N
ATOM    158  CA  ALA  124       52.292  17.818  -1.204  1.00  0.00          C
ATOM    159  C   ALA  124       51.145  18.558  -0.551  1.00  0.00          C
ATOM    160  O   ALA  124       50.842  19.699  -0.927  1.00  0.00          O
ATOM    161  N   ASP  125       50.503  17.983   0.467  1.00  0.00          N
ATOM    162  CA  ASP  125       49.443  18.721   1.153  1.00  0.00          C
ATOM    163  C   ASP  125       50.029  19.736   2.134  1.00  0.00          C
ATOM    164  O   ASP  125       51.192  19.638   2.482  1.00  0.00          O
ATOM    165  N   TYR  126       49.246  20.719   2.565  1.00  0.00          N
ATOM    166  CA  TYR  126       49.634  21.587   3.672  1.00  0.00          C
ATOM    167  C   TYR  126       49.226  20.729   4.895  1.00  0.00          C
ATOM    168  O   TYR  126       48.285  19.942   4.698  1.00  0.00          O
ATOM    169  N   PHE  127       49.976  20.737   5.991  1.00  0.00          N
ATOM    170  CA  PHE  127       49.563  19.825   7.084  1.00  0.00          C
ATOM    171  C   PHE  127       49.443  20.558   8.416  1.00  0.00          C
ATOM    172  O   PHE  127       50.301  21.348   8.778  1.00  0.00          O
TER
END





