
PFRMAT AL
TARGET T0110
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.28 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1bs2a3
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1bs2_A
M   1     M     7
A   2     I     8
R   3     S     9
E   4     Q    10
F   5     L    11
K   6     K    12
R   7     K    13
S   8     L    14
D   9     S    15
R  10     H    26
V  11     P    27
A  12     D    28
Q  13     V    29
E  14     N    30
I  15     I    31
Q  16     V    32
K  17     D    33
E  18     L    34
I  19     M    35
A  20     R    36
V  21     N    37
I  22     Y    38
L  23     I    39
Q  24     S    40
R  25     Q    41
E  26     E    42
V  27     L    43
K  28     S    44
D  29     K    45
P  30     I    46
R  31     S    47
I  32     G    48
G  33     S    51
M  34     S    52
V  35     L    53
T  36     I    54
V  37     F    55
S  38     P    56
D  39     A    57
V  40     L    58
E  41     E    59
V  42     W    60
S  43     T    61
S  44     N    62
D  45     T    63
L  46     M    64
S  47     E    65
Y  48     R    66
A  49     G    67
K  50     D    68
I  51     L    69
F  52     L    70
V  53     I    71
T  54     P    72
F  55     I    73
L  56     P    74
F  57     R    75
D  58     L    76
H  59     R    77
D  60     I    78
E  61     K    79
M  62     G    80
A  63     A    81
I  64     N    82
E  65     P    83
Q  66     K    84
G  67     D    85
M  68     L    86
K  69     A    87
G  70     V    88
L  71     Q    89
E  72     W    90
K  73     A    91
A  74     E    92
S  75     K    93
P  76     F    94
Y  77     P    95
I  78     C    96
R  79     G    97
S  80     D    98
L  81     F    99
L  82     L   100
G  83     E   101
K  84     K   102
A  85     V   103
M  86     E   104
R  87     A   105
L  88     N   106
R  89     G   107
P  92     P   108
E  93     F   109
I  94     I   110
R  95     Q   111
F  96     F   112
I  97     F   113
Y  98     F   114
D  99     N   115
S 109     P   116
N 110     Q   117
L 111     F   118
V 112     L   119
T 113     A   120
N 114     K   121
V 115     L   122
V 116     V   123
R 117     I   124
E 118     P   125
D 119     D   126
E 120     I   127
K 121     L   128
K 122     T   129
H 123     R   130
V 124     K   131
E 125     E   132
E 126     D   133
S 127     Y   134
N 128     G   135
TER
END

