
PFRMAT AL
TARGET T0110
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1ega_A
A    2 D 183
R    3 Y 184
E    4 I 185
F    5 T 186
K    6 D 187
R    7 R 188
S    8 S 189
D    9 Q 190
R   10 R 191
V   11 M 193
A   12 A 194
Q   13 S 195
E   14 E 196
I   15 I 197
Q   16 I 198
K   17 R 199
E   18 E 200
I   19 L 202
A   20 M 203
V   21 R 204
I   22 F 205
L   23 L 206
Q   24 G 207
R   25 A 208
E   26 E 209
V   27 L 210
P   30 P 211
R   31 Y 212
I   32 S 213
G   33 V 214
M   34 T 215
V   35 V 216
T   36 E 217
V   37 I 218
S   38 E 219
D   39 R 220
V   40 F 221
V   42 V 222
S   43 S 223
S   44 N 224
D   45 E 225
L   46 R 226
S   47 G 227
Y   48 G 228
A   49 Y 229
K   50 D 230
I   51 I 231
F   52 N 232
V   53 G 233
T   54 L 234
F   55 I 235
L   56 L 236
H   59 V 237
D   60 E 238
E   61 R 239
M   62 E 240
A   63 G 241
I   64 Q 242
E   65 K 243
Q   66 K 244
G   67 M 245
M   68 V 246
K   69 I 247
G   70 G 248
L   71 N 249
E   72 K 250
K   73 G 251
A   74 A 252
S   75 K 253
P   76 K 255
Y   77 T 256
I   78 I 257
R   79 G 258
S   80 I 259
L   81 E 260
L   82 A 261
G   83 R 262
K   84 K 263
A   85 D 264
M   86 M 265
R   87 Q 266
L   88 M 268
R   89 F 269
I   90 E 270
V   91 A 271
P   92 P 272
E   93 E 276
I   94 L 277
F   96 W 278
I   97 V 279
Y   98 K 280
D   99 V 281
Q  100 K 282
S  101 S 283
V  103 G 284
E  104 W 285
G  105 A 286
M  106 D 287
R  107 D 288
S  109 E 289
N  110 R 290
L  111 A 291
V  112 L 292
T  113 R 293
N  114 S 294
V  115 L 295
TER
END

