
PFRMAT AL
TARGET T0110
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1oel_A
M    1 P 137
A    2 C 138
R    3 S 139
E    4 D 140
F    5 S 141
K    6 K 142
R    7 A 143
S    8 I 144
D    9 A 145
R   10 Q 146
V   11 V 147
A   12 G 148
Q   13 T 149
E   14 I 150
I   15 V 158
Q   16 G 159
K   17 K 160
E   18 L 161
I   19 I 162
A   20 A 163
V   21 E 164
I   22 A 165
L   23 M 166
R   25 D 167
E   26 K 168
V   27 V 169
K   28 G 170
D   29 K 171
P   30 E 172
R   31 G 173
I   32 V 174
V   35 I 175
T   36 T 176
V   37 V 177
S   38 E 178
D   39 D 179
V   40 T 181
E   41 G 182
V   42 L 183
S   43 Q 184
S   44 D 185
D   45 E 186
L   46 L 187
S   47 D 188
Y   48 V 189
A   49 V 190
K   50 G 375
I   51 V 376
F   52 A 377
V   53 V 378
T   54 I 379
F   55 K 380
L   56 V 381
F   57 G 382
D   58 A 383
H   59 A 384
D   60 T 385
E   61 E 386
M   62 V 387
A   63 E 388
I   64 M 389
E   65 K 390
Q   66 E 391
G   67 K 392
M   68 K 393
K   69 A 394
G   70 R 395
L   71 V 396
E   72 E 397
K   73 D 398
A   74 A 399
S   75 L 400
P   76 H 401
Y   77 A 402
I   78 T 403
R   79 R 404
S   80 A 405
L   81 A 406
L   82 V 407
G   83 E 408
K   84 E 409
TER
END

