
PFRMAT AL
TARGET T0110
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1dd5_A
A    2 V 2
R    3 N 3
E    4 P 4
F    5 F 5
K    6 E 11
R    7 K 12
S    8 M 13
D    9 K 14
R   10 R 15
V   11 T 16
A   12 L 17
Q   13 E 18
E   14 K 19
I   15 I 20
Q   16 E 21
K   17 D 22
E   18 E 23
I   19 L 24
A   20 R 25
V   21 K 26
I   22 A 35
L   23 I 36
Q   24 L 37
R   25 E 38
E   26 E 39
V   27 I 40
K   28 K 41
D   29 E 61
P   30 E 62
R   31 R 63
I   32 T 64
G   33 L 65
M   34 V 66
V   35 I 67
T   36 K 68
V   37 P 69
S   38 W 70
D   39 D 71
V   40 K 72
E   41 S 73
V   42 V 74
S   43 S 85
S   44 D 86
D   45 G 88
L   46 L 89
S   47 N 90
Y   48 P 91
A   49 I 92
K   50 N 93
I   51 V 97
F   52 I 98
V   53 R 99
T   54 L 100
F   55 V 101
L   56 F 102
F   57 P 103
D   58 S 104
H   59 P 105
D   60 T 106
E   61 T 107
M   62 E 108
A   63 Q 109
I   64 R 110
E   65 E 111
Q   66 K 112
G   67 W 113
M   68 V 114
K   69 K 115
G   70 K 116
L   71 A 117
E   72 K 118
K   73 E 119
A   74 A 127
S   75 I 128
P   76 R 129
Y   77 N 130
I   78 I 131
R   79 R 132
S   80 R 133
L   81 E 134
L   82 I 135
G   83 L 136
K   84 K 137
A   85 K 138
M   86 I 139
R   87 G 146
L   88 L 147
V   91 I 148
P   92 P 149
E   93 E 150
D   99 D 151
Q  100 D 152
S  101 A 153
L  102 L 156
V  103 E 157
E  104 N 158
G  105 E 159
M  106 I 160
R  107 K 162
M  108 L 163
S  109 D 165
N  110 E 166
L  111 F 167
V  112 I 168
T  113 E 169
N  114 K 170
V  115 L 171
V  116 D 172
R  117 E 173
E  118 E 176
D  119 I 177
E  120 K 178
K  121 K 179
K  122 E 180
H  123 E 181
V  124 I 182
E  125 M 183
E  126 E 184
S  127 F 185
TER
END

