
PFRMAT AL
TARGET T0110
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1b34_A
R   10 K 2
V   11 L 3
A   12 V 4
Q   13 R 5
E   14 F 6
I   15 L 7
Q   16 M 8
K   17 K 9
E   18 L 10
I   19 S 11
A   20 H 12
V   21 E 13
I   22 T 14
L   23 V 15
Q   24 T 16
R   25 I 17
E   26 E 18
V   27 L 19
K   28 K 20
D   29 N 21
P   30 G 22
R   31 T 23
I   32 Q 24
G   33 V 25
M   34 H 26
V   35 G 27
T   36 T 28
V   37 I 29
S   38 T 30
D   39 G 31
V   40 V 32
E   41 D 33
V   42 V 34
S   43 S 35
S   44 M 36
D   45 N 37
L   46 T 38
S   47 H 39
Y   48 L 40
A   49 K 41
K   50 A 42
I   51 V 43
F   52 K 44
V   53 M 45
T   54 T 46
F   57 L 47
D   58 K 48
H   59 N 49
D   60 R 50
E   61 E 51
M   62 P 52
A   63 V 53
I   64 Q 54
E   65 L 55
Q   66 E 56
G   67 T 57
M   68 L 58
K   69 S 59
I   78 I 60
R   79 R 61
G   83 G 62
K   84 N 63
A   85 N 64
M   86 I 65
R   87 R 66
L   88 Y 67
R   89 F 68
I   90 I 69
V   91 L 70
P   92 P 71
Q  100 D 72
S  101 S 73
L  102 L 74
R  107 P 75
M  108 L 76
S  109 D 77
N  110 T 78
L  111 L 79
V  112 L 80
T  113 V 81
TER
END

