
PFRMAT AL
TARGET T0110
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 2if1
A  20    Y  43
V  21    I  44
I  22    H  45
L  23    I  46
Q  24    R  47
R  25    I  48
E  26    Q  49
R  31    R  51
I  32    N  52
G  33    G  53
M  34    R  54
V  35    K  55
T  36    T  56
V  37    L  57
S  38    T  58
D  39    T  59
V  40    V  60
E  41    Q  61
V  42    G  62
S  43    I  63
S  44    A  64
D  45    D  65
L  46    D  66
Y  48    Y  67
A  49    D  68
E  61    K  69
M  62    K  70
A  63    K  71
I  64    L  72
E  65    V  73
Q  66    K  74
G  67    A  75
M  68    F  76
K  69    K  77
G  70    K  78
L  71    K  79
E  72    F  80
K  73    A  81
A  74    C  82
S  75    N  83
P  76    G  84
Y  77    T  85
I  78    V  86
R  79    I  87
S  80    E  88
L  81    H  89
L  82    P  90
R  87    V  95
L  88    I  96
R  89    Q  97
I  90    L  98
V  91    Q  99
P  92    G 100
E  93    D 101
I  94    Q 102
R  95    R 103
F  96    K 104
I  97    N 105
Y  98    I 106
D  99    C 107
Q 100    Q 108
S 101    F 109
L 102    L 110
V 103    V 111
E 104    E 112
G 105    I 113
M 106    G 114
R 107    L 115
M 108    A 116
S 109    K 117
N 110    D 118
L 111    D 119
V 112    Q 120
T 113    L 121
N 114    K 122
V 115    V 123
TER
END


