
PFRMAT AL
TARGET T0110
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1bxy_A
V  35    M   1
T  36    P   2
V  37    R   3
S  38    L   4
D  39    K   5
V  40    V   6
E  41    K   7
V  42    L   8
S  43    V   9
S  44    K  10
D  45    S  11
L  46    P  12
S  47    I  13
Y  48    G  14
A  49    Y  15
K  50    P  16
I  51    K  17
F  52    D  18
V  53    Q  19
T  54    K  20
F  55    A  21
L  56    A  22
F  57    L  23
D  58    K  24
H  59    A  25
D  60    L  26
E  61    G  27
M  62    L  28
A  63    R  29
I  64    R  30
E  65    L  31
Q  66    Q  32
G  67    Q  33
M  68    E  34
K  69    R  35
G  70    V  36
L  71    L  37
E  72    E  38
K  73    D  39
A  74    T  40
P  76    P  41
Y  77    A  42
I  78    I  43
R  79    R  44
S  80    G  45
L  81    N  46
L  82    V  47
G  83    E  48
K  84    K  49
A  85    V  50
M  86    A  51
R  87    H  52
L  88    L  53
R  89    V  54
I  90    R  55
V  91    V  56
P  92    E  57
TER
END


