
PFRMAT AL
TARGET T0110
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1sei_A
D   9    E  25
R  10    V  26
V  11    P  27
A  12    A  28
Q  13    S  29
E  14    K  30
I  15    I  31
Q  16    K  32
K  17    R  33
E  18    E  34
I  19    I  35
A  20    A  36
V  21    E  37
I  22    I  38
L  23    L  39
Q  24    K  40
R  25    R  41
E  26    E  42
V  27    G  43
K  28    F  44
D  29    I  45
P  30    R  46
R  31    D  47
I  32    Y  48
G  33    E  49
M  34    Y  50
V  35    I  51
T  36    E  52
V  37    D  53
I  51    I  61
F  52    F  62
V  53    L  63
H  59    P  67
D  60    N  68
E  61    E  69
M  62    R  70
A  63    V  71
I  64    I  72
E  65    T  73
Q  66    G  74
G  67    L  75
M  68    K  76
K  69    R  77
G  70    I  78
L  71    S  79
E  72    K  80
K  73    P  81
A  74    G  82
S  75    L  83
P  76    R  84
Y  77    V  85
I  78    Y  86
TER
END


