
PFRMAT TS
TARGET T0110
AUTHOR 6153-6797-7392
METHOD A.The Fold & Function Assignment System (FFAS).
METHOD   The method is based on the sequence profile 
METHOD   matching with dynamic programming.
METHOD 
METHOD References
METHOD 
METHOD 1.Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD   "Comparison of sequence profiles. Strategies for structural
METHOD   predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD 2.Jaroszewski, L., Rychlewski, L. & Godzik, A. (2000). 
METHOD   "Improving the quality of twilight-zone alignments". 
METHOD   Protein Science, in press
METHOD 
METHOD B.The Multiple Model Approach (MMA)(1).
METHOD   The first step of the method is calculation of suboptimal
METHOD   alignments. Then the corresponding models of the 
METHOD   target are build and evaluated with the 
METHOD   statistical potentials. The models are build with
METHOD   MODELLER(2).
METHOD 
METHOD References
METHOD 
METHOD 1.Jaroszewski, L., Pawlowski, K. & Godzik, A. (1998). 
METHOD   "Multiple model approach: an extension of comparative modelling". 
METHOD    Journal of Molecular Modelling 4, 294-309 
METHOD 2.Sali, A. and Blundell, T. L. (1993). 
METHOD    "Comparative protein modelling by satisfaction of spatial restraints". 
METHOD    J. Mol. Biol. 234, 779-815
MODEL 3
PARENT 1quq_A
ATOM      1  N   GLU    26      49.690  41.189  81.652  1.00  1.5 
ATOM      2  CA  GLU    26      49.219  40.049  82.468  1.00  1.5 
ATOM      3  CB  GLU    26      47.960  39.428  81.843  1.00  1.5 
ATOM      4  CG  GLU    26      46.732  40.334  81.947  1.00  1.5 
ATOM      5  CD  GLU    26      46.300  40.371  83.406  1.00  1.5 
ATOM      6  OE1 GLU    26      46.978  39.714  84.241  1.00  1.5 
ATOM      7  OE2 GLU    26      45.287  41.057  83.706  1.00  1.5 
ATOM      8  C   GLU    26      50.267  38.996  82.589  1.00  1.5 
ATOM      9  O   GLU    26      51.274  39.185  83.269  1.00  1.5 
ATOM     10  N   VAL    27      50.054  37.847  81.921  1.00  2.37
ATOM     11  CA  VAL    27      50.998  36.777  82.037  1.00  2.37
ATOM     12  CB  VAL    27      50.532  35.502  81.397  1.00  2.37
ATOM     13  CG1 VAL    27      49.272  35.016  82.131  1.00  2.37
ATOM     14  CG2 VAL    27      50.322  35.757  79.895  1.00  2.37
ATOM     15  C   VAL    27      52.265  37.185  81.360  1.00  2.37
ATOM     16  O   VAL    27      52.580  38.368  81.250  1.00  2.37
ATOM     17  N   LYS    28      53.030  36.186  80.881  1.00  3.15
ATOM     18  CA  LYS    28      54.274  36.466  80.233  1.00  3.15
ATOM     19  CB  LYS    28      54.986  35.202  79.722  1.00  3.15
ATOM     20  CG  LYS    28      54.202  34.454  78.641  1.00  3.15
ATOM     21  CD  LYS    28      52.834  33.956  79.110  1.00  3.15
ATOM     22  CE  LYS    28      52.914  32.768  80.072  1.00  3.15
ATOM     23  NZ  LYS    28      53.429  33.215  81.385  1.00  3.15
ATOM     24  C   LYS    28      53.954  37.312  79.053  1.00  3.15
ATOM     25  O   LYS    28      54.639  38.292  78.765  1.00  3.15
ATOM     26  N   ASP    29      52.873  36.945  78.344  1.00  2.43
ATOM     27  CA  ASP    29      52.453  37.694  77.202  1.00  2.43
ATOM     28  CB  ASP    29      51.372  36.951  76.399  1.00  2.43
ATOM     29  CG  ASP    29      52.040  35.736  75.778  1.00  2.43
ATOM     30  OD1 ASP    29      53.298  35.676  75.820  1.00  2.43
ATOM     31  OD2 ASP    29      51.308  34.855  75.254  1.00  2.43
ATOM     32  C   ASP    29      51.875  38.968  77.726  1.00  2.43
ATOM     33  O   ASP    29      52.109  39.333  78.878  1.00  2.43
ATOM     34  N   PRO    30      51.146  39.683  76.918  1.00  1.56
ATOM     35  CA  PRO    30      50.544  40.878  77.427  1.00  1.56
ATOM     36  CD  PRO    30      51.498  39.835  75.515  1.00  1.56
ATOM     37  CB  PRO    30      50.160  41.723  76.208  1.00  1.56
ATOM     38  CG  PRO    30      50.448  40.822  74.992  1.00  1.56
ATOM     39  C   PRO    30      49.408  40.542  78.333  1.00  1.56
ATOM     40  O   PRO    30      49.521  39.599  79.115  1.00  1.56
ATOM     41  N   ARG    31      48.291  41.283  78.222  1.00  1.32
ATOM     42  CA  ARG    31      47.175  41.039  79.083  1.00  1.32
ATOM     43  CB  ARG    31      46.123  42.162  79.063  1.00  1.32
ATOM     44  CG  ARG    31      46.617  43.482  79.659  1.00  1.32
ATOM     45  CD  ARG    31      47.731  44.146  78.848  1.00  1.32
ATOM     46  NE  ARG    31      48.086  45.419  79.536  1.00  1.32
ATOM     47  CZ  ARG    31      48.988  45.414  80.564  1.00  1.32
ATOM     48  NH1 ARG    31      49.555  44.242  80.968  1.00  1.32
ATOM     49  NH2 ARG    31      49.316  46.584  81.185  1.00  1.32
ATOM     50  C   ARG    31      46.509  39.787  78.627  1.00  1.32
ATOM     51  O   ARG    31      46.598  39.404  77.461  1.00  1.32
ATOM     52  N   ILE    32      45.839  39.099  79.567  1.00  0.72
ATOM     53  CA  ILE    32      45.143  37.896  79.240  1.00  0.72
ATOM     54  CB  ILE    32      45.669  36.695  79.969  1.00  0.72
ATOM     55  CG2 ILE    32      45.452  36.915  81.474  1.00  0.72
ATOM     56  CG1 ILE    32      45.037  35.407  79.416  1.00  0.72
ATOM     57  CD1 ILE    32      45.737  34.136  79.894  1.00  0.72
ATOM     58  C   ILE    32      43.728  38.106  79.654  1.00  0.72
ATOM     59  O   ILE    32      43.459  38.783  80.645  1.00  0.72
ATOM     60  N   GLY    33      42.781  37.550  78.875  1.00  0.81
ATOM     61  CA  GLY    33      41.397  37.727  79.192  1.00  0.81
ATOM     62  C   GLY    33      40.883  36.470  79.807  1.00  0.81
ATOM     63  O   GLY    33      40.931  36.289  81.023  1.00  0.81
ATOM     64  N   MET    34      40.373  35.558  78.960  1.00  1.74
ATOM     65  CA  MET    34      39.802  34.353  79.472  1.00  1.74
ATOM     66  CB  MET    34      38.641  33.812  78.621  1.00  1.74
ATOM     67  CG  MET    34      37.949  32.594  79.236  1.00  1.74
ATOM     68  SD  MET    34      36.957  32.962  80.715  1.00  1.74
ATOM     69  CE  MET    34      36.413  31.250  80.982  1.00  1.74
ATOM     70  C   MET    34      40.866  33.313  79.491  1.00  1.74
ATOM     71  O   MET    34      41.517  33.043  78.484  1.00  1.74
ATOM     72  N   VAL    35      41.081  32.720  80.677  1.00  1.92
ATOM     73  CA  VAL    35      42.056  31.688  80.826  1.00  1.92
ATOM     74  CB  VAL    35      43.325  32.186  81.452  1.00  1.92
ATOM     75  CG1 VAL    35      42.991  32.800  82.820  1.00  1.92
ATOM     76  CG2 VAL    35      44.340  31.035  81.502  1.00  1.92
ATOM     77  C   VAL    35      41.431  30.662  81.710  1.00  1.92
ATOM     78  O   VAL    35      40.519  30.973  82.475  1.00  1.92
ATOM     79  N   THR    36      41.881  29.396  81.611  1.00  1.8 
ATOM     80  CA  THR    36      41.267  28.378  82.410  1.00  1.8 
ATOM     81  CB  THR    36      40.562  27.332  81.598  1.00  1.8 
ATOM     82  OG1 THR    36      39.814  26.472  82.445  1.00  1.8 
ATOM     83  CG2 THR    36      41.611  26.529  80.810  1.00  1.8 
ATOM     84  C   THR    36      42.322  27.684  83.206  1.00  1.8 
ATOM     85  O   THR    36      43.482  27.617  82.803  1.00  1.8 
ATOM     86  N   VAL    37      41.934  27.170  84.390  1.00  1.47
ATOM     87  CA  VAL    37      42.855  26.454  85.219  1.00  1.47
ATOM     88  CB  VAL    37      43.449  27.303  86.317  1.00  1.47
ATOM     89  CG1 VAL    37      42.340  28.017  87.110  1.00  1.47
ATOM     90  CG2 VAL    37      44.350  26.401  87.177  1.00  1.47
ATOM     91  C   VAL    37      42.138  25.273  85.801  1.00  1.47
ATOM     92  O   VAL    37      42.458  24.129  85.482  1.00  1.47
ATOM     93  N   SER    38      41.128  25.522  86.656  1.00  0.81
ATOM     94  CA  SER    38      40.410  24.467  87.304  1.00  0.81
ATOM     95  CB  SER    38      39.980  23.326  86.361  1.00  0.81
ATOM     96  OG  SER    38      39.060  23.807  85.392  1.00  0.81
ATOM     97  C   SER    38      41.324  23.906  88.338  1.00  0.81
ATOM     98  O   SER    38      42.490  23.629  88.059  1.00  0.81
ATOM     99  N   ASP    39      40.827  23.756  89.581  1.00  0.84
ATOM    100  CA  ASP    39      41.678  23.201  90.589  1.00  0.84
ATOM    101  CB  ASP    39      42.334  24.239  91.516  1.00  0.84
ATOM    102  CG  ASP    39      43.401  24.994  90.740  1.00  0.84
ATOM    103  OD1 ASP    39      43.069  25.556  89.662  1.00  0.84
ATOM    104  OD2 ASP    39      44.562  25.034  91.227  1.00  0.84
ATOM    105  C   ASP    39      40.869  22.314  91.474  1.00  0.84
ATOM    106  O   ASP    39      39.799  22.683  91.954  1.00  0.84
ATOM    107  N   VAL    40      41.371  21.088  91.688  1.00  1.56
ATOM    108  CA  VAL    40      40.751  20.191  92.609  1.00  1.56
ATOM    109  CB  VAL    40      40.045  19.040  91.960  1.00  1.56
ATOM    110  CG1 VAL    40      38.904  19.598  91.093  1.00  1.56
ATOM    111  CG2 VAL    40      41.074  18.214  91.173  1.00  1.56
ATOM    112  C   VAL    40      41.882  19.646  93.407  1.00  1.56
ATOM    113  O   VAL    40      42.942  19.348  92.860  1.00  1.56
ATOM    114  N   GLU    41      41.703  19.526  94.733  1.00  1.59
ATOM    115  CA  GLU    41      42.803  19.041  95.508  1.00  1.59
ATOM    116  CB  GLU    41      42.660  19.302  97.022  1.00  1.59
ATOM    117  CG  GLU    41      41.415  18.682  97.663  1.00  1.59
ATOM    118  CD  GLU    41      41.719  17.243  98.052  1.00  1.59
ATOM    119  OE1 GLU    41      42.697  17.030  98.820  1.00  1.59
ATOM    120  OE2 GLU    41      40.975  16.337  97.592  1.00  1.59
ATOM    121  C   GLU    41      42.916  17.575  95.272  1.00  1.59
ATOM    122  O   GLU    41      41.929  16.844  95.294  1.00  1.59
ATOM    123  N   VAL    42      44.146  17.109  95.005  1.00  1.11
ATOM    124  CA  VAL    42      44.331  15.709  94.803  1.00  1.11
ATOM    125  CB  VAL    42      45.253  15.398  93.664  1.00  1.11
ATOM    126  CG1 VAL    42      45.580  13.897  93.697  1.00  1.11
ATOM    127  CG2 VAL    42      44.550  15.819  92.364  1.00  1.11
ATOM    128  C   VAL    42      44.953  15.203  96.053  1.00  1.11
ATOM    129  O   VAL    42      44.550  14.171  96.584  1.00  1.11
ATOM    130  N   SER    43      45.946  15.950  96.567  1.00  0.93
ATOM    131  CA  SER    43      46.586  15.550  97.781  1.00  0.93
ATOM    132  CB  SER    43      47.838  14.681  97.559  1.00  0.93
ATOM    133  OG  SER    43      47.480  13.432  96.985  1.00  0.93
ATOM    134  C   SER    43      47.034  16.790  98.479  1.00  0.93
ATOM    135  O   SER    43      46.962  17.889  97.926  1.00  0.93
ATOM    136  N   SER    44      47.478  16.646  99.740  1.00  0.66
ATOM    137  CA  SER    44      47.988  17.776 100.457  1.00  0.66
ATOM    138  CB  SER    44      46.958  18.439 101.390  1.00  0.66
ATOM    139  OG  SER    44      46.511  17.519 102.374  1.00  0.66
ATOM    140  C   SER    44      49.128  17.284 101.287  1.00  0.66
ATOM    141  O   SER    44      49.107  16.157 101.780  1.00  0.66
ATOM    142  N   ASP    45      50.173  18.118 101.449  1.00  0.93
ATOM    143  CA  ASP    45      51.293  17.679 102.227  1.00  0.93
ATOM    144  CB  ASP    45      52.594  17.488 101.421  1.00  0.93
ATOM    145  CG  ASP    45      52.514  16.179 100.652  1.00  0.93
ATOM    146  OD1 ASP    45      51.523  15.431 100.867  1.00  0.93
ATOM    147  OD2 ASP    45      53.444  15.899  99.849  1.00  0.93
ATOM    148  C   ASP    45      51.595  18.705 103.261  1.00  0.93
ATOM    149  O   ASP    45      51.453  19.907 103.038  1.00  0.93
ATOM    150  N   LEU    46      52.023  18.233 104.445  1.00  1.68
ATOM    151  CA  LEU    46      52.404  19.149 105.470  1.00  1.68
ATOM    152  CB  LEU    46      52.325  18.562 106.889  1.00  1.68
ATOM    153  CG  LEU    46      52.748  19.562 107.981  1.00  1.68
ATOM    154  CD2 LEU    46      52.936  18.870 109.341  1.00  1.68
ATOM    155  CD1 LEU    46      51.783  20.755 108.044  1.00  1.68
ATOM    156  C   LEU    46      53.834  19.461 105.212  1.00  1.68
ATOM    157  O   LEU    46      54.717  18.668 105.533  1.00  1.68
ATOM    158  N   SER    47      54.101  20.630 104.603  1.00  1.71
ATOM    159  CA  SER    47      55.463  20.982 104.347  1.00  1.71
ATOM    160  CB  SER    47      55.613  22.166 103.380  1.00  1.71
ATOM    161  OG  SER    47      55.101  21.826 102.100  1.00  1.71
ATOM    162  C   SER    47      56.050  21.383 105.656  1.00  1.71
ATOM    163  O   SER    47      55.629  20.906 106.708  1.00  1.71
ATOM    164  N   TYR    48      57.044  22.290 105.633  1.00  1.23
ATOM    165  CA  TYR    48      57.630  22.671 106.881  1.00  1.23
ATOM    166  CB  TYR    48      59.157  22.844 106.791  1.00  1.23
ATOM    167  CG  TYR    48      59.759  21.533 106.411  1.00  1.23
ATOM    168  CD1 TYR    48      59.997  20.559 107.355  1.00  1.23
ATOM    169  CD2 TYR    48      60.093  21.281 105.100  1.00  1.23
ATOM    170  CE1 TYR    48      60.556  19.354 106.995  1.00  1.23
ATOM    171  CE2 TYR    48      60.652  20.080 104.733  1.00  1.23
ATOM    172  CZ  TYR    48      60.885  19.115 105.682  1.00  1.23
ATOM    173  OH  TYR    48      61.459  17.882 105.306  1.00  1.23
ATOM    174  C   TYR    48      57.069  24.005 107.248  1.00  1.23
ATOM    175  O   TYR    48      56.521  24.182 108.334  1.00  1.23
ATOM    176  N   ALA    49      57.165  24.975 106.319  1.00  1.23
ATOM    177  CA  ALA    49      56.703  26.305 106.585  1.00  1.23
ATOM    178  CB  ALA    49      56.992  27.274 105.427  1.00  1.23
ATOM    179  C   ALA    49      55.223  26.287 106.782  1.00  1.23
ATOM    180  O   ALA    49      54.715  26.830 107.762  1.00  1.23
ATOM    181  N   LYS    50      54.487  25.638 105.860  1.00  1.56
ATOM    182  CA  LYS    50      53.055  25.621 105.949  1.00  1.56
ATOM    183  CB  LYS    50      52.397  26.873 105.327  1.00  1.56
ATOM    184  CG  LYS    50      52.966  27.250 103.954  1.00  1.56
ATOM    185  CD  LYS    50      52.746  26.183 102.885  1.00  1.56
ATOM    186  CE  LYS    50      53.360  26.499 101.527  1.00  1.56
ATOM    187  NZ  LYS    50      54.815  26.232 101.559  1.00  1.56
ATOM    188  C   LYS    50      52.564  24.416 105.211  1.00  1.56
ATOM    189  O   LYS    50      53.350  23.627 104.690  1.00  1.56
ATOM    190  N   ILE    51      51.229  24.248 105.137  1.00  1.59
ATOM    191  CA  ILE    51      50.692  23.124 104.427  1.00  1.59
ATOM    192  CB  ILE    51      49.784  22.265 105.253  1.00  1.59
ATOM    193  CG2 ILE    51      48.657  23.144 105.825  1.00  1.59
ATOM    194  CG1 ILE    51      49.290  21.093 104.392  1.00  1.59
ATOM    195  CD1 ILE    51      48.527  20.037 105.181  1.00  1.59
ATOM    196  C   ILE    51      49.860  23.614 103.283  1.00  1.59
ATOM    197  O   ILE    51      49.196  24.645 103.377  1.00  1.59
ATOM    198  N   PHE    52      49.900  22.892 102.147  1.00  1.89
ATOM    199  CA  PHE    52      49.053  23.244 101.043  1.00  1.89
ATOM    200  CB  PHE    52      49.644  24.202  99.990  1.00  1.89
ATOM    201  CG  PHE    52      49.419  25.608 100.422  1.00  1.89
ATOM    202  CD1 PHE    52      48.262  26.265 100.055  1.00  1.89
ATOM    203  CD2 PHE    52      50.348  26.269 101.187  1.00  1.89
ATOM    204  CE1 PHE    52      48.041  27.567 100.446  1.00  1.89
ATOM    205  CE2 PHE    52      50.135  27.569 101.580  1.00  1.89
ATOM    206  CZ  PHE    52      48.981  28.221 101.207  1.00  1.89
ATOM    207  C   PHE    52      48.697  22.010 100.293  1.00  1.89
ATOM    208  O   PHE    52      49.265  20.942 100.512  1.00  1.89
ATOM    209  N   VAL    53      47.718  22.150  99.380  1.00  2.1 
ATOM    210  CA  VAL    53      47.300  21.067  98.545  1.00  2.1 
ATOM    211  CB  VAL    53      45.817  20.916  98.472  1.00  2.1 
ATOM    212  CG1 VAL    53      45.283  20.604  99.881  1.00  2.1 
ATOM    213  CG2 VAL    53      45.251  22.206  97.862  1.00  2.1 
ATOM    214  C   VAL    53      47.752  21.416  97.167  1.00  2.1 
ATOM    215  O   VAL    53      47.976  22.589  96.869  1.00  2.1 
ATOM    216  N   THR    54      47.925  20.405  96.289  1.00  1.95
ATOM    217  CA  THR    54      48.364  20.732  94.965  1.00  1.95
ATOM    218  CB  THR    54      49.811  20.430  94.738  1.00  1.95
ATOM    219  OG1 THR    54      50.041  19.031  94.840  1.00  1.95
ATOM    220  CG2 THR    54      50.628  21.179  95.801  1.00  1.95
ATOM    221  C   THR    54      47.649  19.885  93.968  1.00  1.95
ATOM    222  O   THR    54      47.191  18.790  94.292  1.00  1.95
ATOM    223  N   PHE    55      47.553  20.410  92.725  1.00  1.8 
ATOM    224  CA  PHE    55      47.057  19.689  91.588  1.00  1.8 
ATOM    225  CB  PHE    55      48.003  18.513  91.259  1.00  1.8 
ATOM    226  CG  PHE    55      47.445  17.709  90.141  1.00  1.8 
ATOM    227  CD1 PHE    55      47.537  18.145  88.842  1.00  1.8 
ATOM    228  CD2 PHE    55      46.841  16.503  90.404  1.00  1.8 
ATOM    229  CE1 PHE    55      47.020  17.394  87.815  1.00  1.8 
ATOM    230  CE2 PHE    55      46.323  15.750  89.379  1.00  1.8 
ATOM    231  CZ  PHE    55      46.408  16.194  88.080  1.00  1.8 
ATOM    232  C   PHE    55      45.614  19.207  91.722  1.00  1.8 
ATOM    233  O   PHE    55      44.796  19.622  90.857  1.00  1.8 
ATOM    234  OXT PHE    55      45.304  18.429  92.661  1.00  1.8 
TER
END
 - - - - - - - - - - - - - - - - - -
 Lukasz Jaroszewski, Ph. D.
 The Burnham Institute,
 10901 North Torrey Pines Road,
 La Jolla, CA 92037, USA
 phone +1 (858) 646 3100 ext. 3553
 fax  +1 (858) 646 3171
 - - - - - - - - - - - - - - - - - -

