
PFRMAT TS 
TARGET T0110
AUTHOR 1395-2891-7461
REMARK
REMARK Ugo Bastolla, Jochen Farwer and Ernst-Walter Knapp
REMARK Freie Universitaet Berlin, Institute of Crystallography
REMARK
METHOD For all fragments of the given sequence with length
METHOD between 35 and 60 residues, decoy structures were generated by
METHOD threading using a set of 1015 proteins (Hobohm U, Sander C.
METHOD Enlarged representative set of protein structure.
METHOD Protein Sci 1994; 3: 522-524. List available at
METHOD ftp://ftp.embl-heidelberg.de/pub/databases/
METHOD protein_extras/pdb_select/recent.pdb_select).
METHOD For all fragments the decoy structure of lowest energy was determined
METHOD using a modification of the energy function described in
METHOD (Bastolla U, Vendruscolo M,
METHOD Knapp EW.
METHOD A statistical mechanical method to optimize energy functions for
METHOD protein folding.
METHOD Proc Natl Acad Sci USA 2000, 97: 3977-3981).
METHOD An alignment was chosen using the z score, the alpha value and
METHOD a secondary structure prediction made by NNSSP
METHOD (Salamov A.A., Solovyev V.V.
METHOD Prediction of protein secondary sturcture by combining
METHOD nearest-neighbor algorithms and multiple sequence alignments.
METHOD J.Mol.Biol.,1995, 247, 11-15.).
MODEL 1
PARENT 3lzt
ATOM      1  N   GLU    65      -5.839   8.609  22.928  1.00  0.00          N
ATOM      2  CA  GLU    65      -4.969   9.694  23.361  1.00  0.00          C
ATOM      3  C   GLU    65      -5.738  11.009  23.458  1.00  0.00          C
ATOM      4  O   GLU    65      -5.521  11.753  24.417  1.00  0.00          O
ATOM      5  N   GLN    66      -6.589  11.297  22.504  1.00  0.00          N
ATOM      6  CA  GLN    66      -7.341  12.534  22.585  1.00  0.00          C
ATOM      7  C   GLN    66      -8.303  12.487  23.739  1.00  0.00          C
ATOM      8  O   GLN    66      -8.440  13.465  24.513  1.00  0.00          O
ATOM      9  N   GLY    67      -9.037  11.369  23.937  1.00  0.00          N
ATOM     10  CA  GLY    67      -9.989  11.333  25.019  1.00  0.00          C
ATOM     11  C   GLY    67      -9.291  11.449  26.341  1.00  0.00          C
ATOM     12  O   GLY    67      -9.820  12.079  27.270  1.00  0.00          O
ATOM     13  N   MET    68      -8.137  10.828  26.475  1.00  0.00          N
ATOM     14  CA  MET    68      -7.413  10.915  27.740  1.00  0.00          C
ATOM     15  C   MET    68      -6.839  12.320  27.944  1.00  0.00          C
ATOM     16  O   MET    68      -6.904  12.851  29.052  1.00  0.00          O
ATOM     17  N   LYS    69      -6.360  12.954  26.870  1.00  0.00          N
ATOM     18  CA  LYS    69      -5.917  14.335  26.977  1.00  0.00          C
ATOM     19  C   LYS    69      -7.062  15.227  27.483  1.00  0.00          C
ATOM     20  O   LYS    69      -6.870  16.114  28.307  1.00  0.00          O
ATOM     21  N   GLY    70      -8.268  15.007  26.962  1.00  0.00          N
ATOM     22  CA  GLY    70      -9.406  15.753  27.416  1.00  0.00          C
ATOM     23  C   GLY    70      -9.649  15.530  28.889  1.00  0.00          C
ATOM     24  O   GLY    70      -9.993  16.455  29.649  1.00  0.00          O
ATOM     25  N   LEU    71      -9.514  14.304  29.354  1.00  0.00          N
ATOM     26  CA  LEU    71      -9.694  13.968  30.755  1.00  0.00          C
ATOM     27  C   LEU    71      -8.641  14.668  31.616  1.00  0.00          C
ATOM     28  O   LEU    71      -8.958  15.120  32.740  1.00  0.00          O
ATOM     29  N   GLU    72      -7.395  14.718  31.157  1.00  0.00          N
ATOM     30  CA  GLU    72      -6.354  15.379  31.918  1.00  0.00          C
ATOM     31  C   GLU    72      -6.770  16.799  32.199  1.00  0.00          C
ATOM     32  O   GLU    72      -6.665  17.292  33.340  1.00  0.00          O
ATOM     33  N   LYS    73      -7.264  17.484  31.166  1.00  0.00          N
ATOM     34  CA  LYS    73      -7.708  18.873  31.398  1.00  0.00          C
ATOM     35  C   LYS    73      -8.985  18.942  32.122  1.00  0.00          C
ATOM     36  O   LYS    73      -9.207  19.818  33.033  1.00  0.00          O
ATOM     37  N   ALA    74      -9.897  18.005  31.950  1.00  0.00          N
ATOM     38  CA  ALA    74     -11.163  17.981  32.701  1.00  0.00          C
ATOM     39  C   ALA    74     -10.961  17.756  34.194  1.00  0.00          C
ATOM     40  O   ALA    74     -11.815  18.064  35.009  1.00  0.00          O
ATOM     41  N   SER    75      -9.842  17.147  34.546  1.00  0.00          N
ATOM     42  CA  SER    75      -9.428  16.917  35.923  1.00  0.00          C
ATOM     43  C   SER    75      -8.598  18.052  36.476  1.00  0.00          C
ATOM     44  O   SER    75      -8.006  17.935  37.573  1.00  0.00          O
ATOM     45  N   PRO    76      -8.631  19.212  35.833  1.00  0.00          N
ATOM     46  CA  PRO    76      -8.147  20.434  36.367  1.00  0.00          C
ATOM     47  C   PRO    76      -6.705  20.768  36.069  1.00  0.00          C
ATOM     48  O   PRO    76      -6.196  21.756  36.605  1.00  0.00          O
ATOM     49  N   TYR    77      -6.060  19.994  35.243  1.00  0.00          N
ATOM     50  CA  TYR    77      -4.705  20.180  34.917  1.00  0.00          C
ATOM     51  C   TYR    77      -4.840  21.089  33.658  1.00  0.00          C
ATOM     52  O   TYR    77      -5.716  20.955  32.781  1.00  0.00          O
ATOM     53  N   ILE    78      -3.999  22.104  33.543  1.00  0.00          N
ATOM     54  CA  ILE    78      -3.876  22.679  32.242  1.00  0.00          C
ATOM     55  C   ILE    78      -3.079  21.764  31.319  1.00  0.00          C
ATOM     56  O   ILE    78      -2.637  20.659  31.631  1.00  0.00          O
ATOM     57  N   ARG    79      -2.694  22.416  30.232  1.00  0.00          N
ATOM     58  CA  ARG    79      -1.680  21.837  29.347  1.00  0.00          C
ATOM     59  C   ARG    79      -0.304  21.909  29.967  1.00  0.00          C
ATOM     60  O   ARG    79       0.595  21.216  29.480  1.00  0.00          O
ATOM     61  N   SER    80      -0.166  22.565  31.087  1.00  0.00          N
ATOM     62  CA  SER    80       1.041  22.488  31.891  1.00  0.00          C
ATOM     63  C   SER    80       1.361  21.039  32.270  1.00  0.00          C
ATOM     64  O   SER    80       2.533  20.746  32.529  1.00  0.00          O
ATOM     65  N   LEU    81       0.384  20.148  32.240  1.00  0.00          N
ATOM     66  CA  LEU    81       0.629  18.750  32.490  1.00  0.00          C
ATOM     67  C   LEU    81       1.606  18.136  31.522  1.00  0.00          C
ATOM     68  O   LEU    81       2.239  17.162  31.883  1.00  0.00          O
ATOM     69  N   LEU    82       1.693  18.672  30.323  1.00  0.00          N
ATOM     70  CA  LEU    82       2.626  18.182  29.322  1.00  0.00          C
ATOM     71  C   LEU    82       3.913  19.021  29.394  1.00  0.00          C
ATOM     72  O   LEU    82       3.928  20.192  29.016  1.00  0.00          O
ATOM     73  N   GLY    83       4.982  18.388  29.861  1.00  0.00          N
ATOM     74  CA  GLY    83       6.222  19.105  30.033  1.00  0.00          C
ATOM     75  C   GLY    83       6.700  19.724  28.748  1.00  0.00          C
ATOM     76  O   GLY    83       7.246  20.817  28.748  1.00  0.00          O
ATOM     77  N   LYS    84       6.506  19.033  27.634  1.00  0.00          N
ATOM     78  CA  LYS    84       6.958  19.619  26.412  1.00  0.00          C
ATOM     79  C   LYS    84       6.144  20.828  25.991  1.00  0.00          C
ATOM     80  O   LYS    84       6.655  21.742  25.381  1.00  0.00          O
ATOM     81  N   ALA    85       4.854  20.814  26.309  1.00  0.00          N
ATOM     82  CA  ALA    85       4.058  21.973  26.004  1.00  0.00          C
ATOM     83  C   ALA    85       4.558  23.149  26.873  1.00  0.00          C
ATOM     84  O   ALA    85       4.805  24.251  26.375  1.00  0.00          O
ATOM     85  N   MET    86       4.730  22.921  28.163  1.00  0.00          N
ATOM     86  CA  MET    86       5.178  23.944  29.074  1.00  0.00          C
ATOM     87  C   MET    86       6.527  24.511  28.703  1.00  0.00          C
ATOM     88  O   MET    86       6.741  25.689  28.934  1.00  0.00          O
ATOM     89  N   ARG    87       7.425  23.657  28.240  1.00  0.00          N
ATOM     90  CA  ARG    87       8.808  24.021  28.042  1.00  0.00          C
ATOM     91  C   ARG    87       9.252  24.405  26.712  1.00  0.00          C
ATOM     92  O   ARG    87      10.331  24.903  26.565  1.00  0.00          O
ATOM     93  N   LEU    88       8.342  24.309  25.812  1.00  0.00          N
ATOM     94  CA  LEU    88       8.561  24.501  24.411  1.00  0.00          C
ATOM     95  C   LEU    88       7.426  25.264  23.741  1.00  0.00          C
ATOM     96  O   LEU    88       7.789  26.017  22.769  1.00  0.00          O
ATOM     97  N   ARG    89       6.106  25.089  24.016  1.00  0.00          N
ATOM     98  CA  ARG    89       4.996  25.614  23.293  1.00  0.00          C
ATOM     99  C   ARG    89       4.398  26.880  23.945  1.00  0.00          C
ATOM    100  O   ARG    89       3.991  27.841  23.242  1.00  0.00          O
ATOM    101  N   ILE    90       4.282  26.872  25.260  1.00  0.00          N
ATOM    102  CA  ILE    90       3.657  27.949  26.000  1.00  0.00          C
ATOM    103  C   ILE    90       4.323  29.268  25.648  1.00  0.00          C
ATOM    104  O   ILE    90       5.538  29.379  25.691  1.00  0.00          O
ATOM    105  N   VAL    91       3.475  30.247  25.326  1.00  0.00          N
ATOM    106  CA  VAL    91       3.956  31.592  25.037  1.00  0.00          C
ATOM    107  C   VAL    91       4.372  31.832  23.640  1.00  0.00          C
ATOM    108  O   VAL    91       4.709  32.969  23.263  1.00  0.00          O
ATOM    109  N   PRO    92       4.471  30.792  22.789  1.00  0.00          N
ATOM    110  CA  PRO    92       4.902  30.934  21.425  1.00  0.00          C
ATOM    111  C   PRO    92       3.730  31.103  20.504  1.00  0.00          C
ATOM    112  O   PRO    92       2.586  30.957  20.912  1.00  0.00          O
ATOM    113  N   GLU    93       3.995  31.383  19.225  1.00  0.00          N
ATOM    114  CA  GLU    93       2.930  31.461  18.238  1.00  0.00          C
ATOM    115  C   GLU    93       2.540  30.059  17.803  1.00  0.00          C
ATOM    116  O   GLU    93       2.906  29.518  16.756  1.00  0.00          O
ATOM    117  N   ILE    94       1.774  29.389  18.656  1.00  0.00          N
ATOM    118  CA  ILE    94       1.390  28.012  18.449  1.00  0.00          C
ATOM    119  C   ILE    94       0.534  27.825  17.261  1.00  0.00          C
ATOM    120  O   ILE    94       0.473  26.735  16.703  1.00  0.00          O
ATOM    121  N   ARG    95      -0.136  28.862  16.807  1.00  0.00          N
ATOM    122  CA  ARG    95      -0.993  28.745  15.645  1.00  0.00          C
ATOM    123  C   ARG    95      -0.158  28.445  14.418  1.00  0.00          C
ATOM    124  O   ARG    95      -0.675  27.940  13.415  1.00  0.00          O
ATOM    125  N   PHE    96       1.131  28.728  14.457  1.00  0.00          N
ATOM    126  CA  PHE    96       1.957  28.336  13.343  1.00  0.00          C
ATOM    127  C   PHE    96       1.866  26.851  13.047  1.00  0.00          C
ATOM    128  O   PHE    96       2.057  26.440  11.912  1.00  0.00          O
ATOM    129  N   ILE    97       1.630  26.018  14.044  1.00  0.00          N
ATOM    130  CA  ILE    97       1.564  24.589  13.860  1.00  0.00          C
ATOM    131  C   ILE    97       0.384  24.166  12.981  1.00  0.00          C
ATOM    132  O   ILE    97       0.435  23.037  12.492  1.00  0.00          O
ATOM    133  N   TYR    98      -0.644  24.980  12.843  1.00  0.00          N
ATOM    134  CA  TYR    98      -1.775  24.643  12.040  1.00  0.00          C
ATOM    135  C   TYR    98      -1.855  25.501  10.805  1.00  0.00          C
ATOM    136  O   TYR    98      -2.791  25.336   9.998  1.00  0.00          O
ATOM    137  N   ASP    99      -0.890  26.375  10.598  1.00  0.00          N
ATOM    138  CA  ASP    99      -0.939  27.291   9.461  1.00  0.00          C
ATOM    139  C   ASP    99      -0.797  26.505   8.183  1.00  0.00          C
ATOM    140  O   ASP    99       0.022  25.631   8.039  1.00  0.00          O
ATOM    141  N   GLN   100      -1.574  26.846   7.191  1.00  0.00          N
ATOM    142  CA  GLN   100      -1.538  26.192   5.932  1.00  0.00          C
ATOM    143  C   GLN   100      -2.207  24.865   5.868  1.00  0.00          C
ATOM    144  O   GLN   100      -2.128  24.214   4.828  1.00  0.00          O
ATOM    145  N   SER   101      -2.830  24.425   6.960  1.00  0.00          N
ATOM    146  CA  SER   101      -3.480  23.130   6.982  1.00  0.00          C
ATOM    147  C   SER   101      -4.929  23.224   6.559  1.00  0.00          C
ATOM    148  O   SER   101      -5.658  24.126   6.995  1.00  0.00          O
ATOM    149  N   LEU   102      -5.411  22.215   5.863  1.00  0.00          N
ATOM    150  CA  LEU   102      -6.836  22.049   5.590  1.00  0.00          C
ATOM    151  C   LEU   102      -7.562  21.498   6.829  1.00  0.00          C
ATOM    152  O   LEU   102      -7.273  20.404   7.293  1.00  0.00          O
ATOM    153  N   VAL   103      -8.573  22.191   7.332  1.00  0.00          N
ATOM    154  CA  VAL   103      -9.267  21.801   8.543  1.00  0.00          C
ATOM    155  C   VAL   103     -10.789  21.934   8.410  1.00  0.00          C
ATOM    156  O   VAL   103     -11.228  22.310   7.305  1.00  0.00          O
TER
END


