
PFRMAT TS 
TARGET T0110
AUTHOR 1395-2891-7461
REMARK
REMARK Ugo Bastolla, Jochen Farwer and Ernst-Walter Knapp
REMARK Freie Universitaet Berlin, Institute of Crystallography
REMARK
METHOD For all fragments of the given sequence with length
METHOD between 35 and 60 residues, decoy structures were generated by
METHOD threading using a set of 1015 proteins (Hobohm U, Sander C.
METHOD Enlarged representative set of protein structure.
METHOD Protein Sci 1994; 3: 522-524. List available at
METHOD ftp://ftp.embl-heidelberg.de/pub/databases/
METHOD protein_extras/pdb_select/recent.pdb_select).
METHOD For all fragments the decoy structure of lowest energy was determined
METHOD using a modification of the energy function described in
METHOD (Bastolla U, Vendruscolo M,
METHOD Knapp EW.
METHOD A statistical mechanical method to optimize energy functions for
METHOD protein folding.
METHOD Proc Natl Acad Sci USA 2000, 97: 3977-3981).
METHOD An alignment was chosen using the z score, the alpha value and
METHOD a secondary structure prediction made by NNSSP
METHOD (Salamov A.A., Solovyev V.V.
METHOD Prediction of protein secondary sturcture by combining
METHOD nearest-neighbor algorithms and multiple sequence alignments.
METHOD J.Mol.Biol.,1995, 247, 11-15.).
MODEL 2
PARENT 153l
ATOM      1  N   ALA    12       6.210  25.500  27.159  1.00  0.00          N
ATOM      2  CA  ALA    12       7.510  25.182  26.554  1.00  0.00          C
ATOM      3  C   ALA    12       7.715  23.753  26.067  1.00  0.00          C
ATOM      4  O   ALA    12       8.332  23.494  25.003  1.00  0.00          O
ATOM      5  N   GLN    13       7.235  22.796  26.899  1.00  0.00          N
ATOM      6  CA  GLN    13       7.465  21.346  26.576  1.00  0.00          C
ATOM      7  C   GLN    13       6.305  20.353  26.751  1.00  0.00          C
ATOM      8  O   GLN    13       6.493  19.131  26.694  1.00  0.00          O
ATOM      9  N   GLU    14       5.141  20.937  27.077  1.00  0.00          N
ATOM     10  CA  GLU    14       3.960  20.140  27.381  1.00  0.00          C
ATOM     11  C   GLU    14       4.307  19.165  28.492  1.00  0.00          C
ATOM     12  O   GLU    14       4.043  17.981  28.438  1.00  0.00          O
ATOM     13  N   ILE    15       4.983  19.654  29.516  1.00  0.00          N
ATOM     14  CA  ILE    15       5.366  18.810  30.629  1.00  0.00          C
ATOM     15  C   ILE    15       6.264  17.619  30.237  1.00  0.00          C
ATOM     16  O   ILE    15       6.205  16.557  30.821  1.00  0.00          O
ATOM     17  N   GLN    16       7.132  17.855  29.268  1.00  0.00          N
ATOM     18  CA  GLN    16       8.078  16.873  28.787  1.00  0.00          C
ATOM     19  C   GLN    16       7.609  16.001  27.634  1.00  0.00          C
ATOM     20  O   GLN    16       8.373  15.307  26.972  1.00  0.00          O
ATOM     21  N   LYS    17       6.312  15.986  27.338  1.00  0.00          N
ATOM     22  CA  LYS    17       5.767  15.135  26.301  1.00  0.00          C
ATOM     23  C   LYS    17       6.409  15.330  24.937  1.00  0.00          C
ATOM     24  O   LYS    17       6.420  14.410  24.146  1.00  0.00          O
ATOM     25  N   GLU    18       6.858  16.534  24.559  1.00  0.00          N
ATOM     26  CA  GLU    18       7.383  16.719  23.221  1.00  0.00          C
ATOM     27  C   GLU    18       8.900  16.768  23.177  1.00  0.00          C
ATOM     28  O   GLU    18       9.473  17.240  22.194  1.00  0.00          O
ATOM     29  N   ILE    19       9.510  16.275  24.220  1.00  0.00          N
ATOM     30  CA  ILE    19      10.963  16.300  24.311  1.00  0.00          C
ATOM     31  C   ILE    19      11.553  14.941  24.036  1.00  0.00          C
ATOM     32  O   ILE    19      10.877  13.941  24.207  1.00  0.00          O
ATOM     33  N   ALA    20      12.838  14.948  23.670  1.00  0.00          N
ATOM     34  CA  ALA    20      13.622  13.748  23.388  1.00  0.00          C
ATOM     35  C   ALA    20      14.845  13.792  24.254  1.00  0.00          C
ATOM     36  O   ALA    20      15.767  14.571  24.010  1.00  0.00          O
ATOM     37  N   VAL    21      14.767  13.020  25.298  1.00  0.00          N
ATOM     38  CA  VAL    21      15.837  12.986  26.251  1.00  0.00          C
ATOM     39  C   VAL    21      16.071  14.411  26.804  1.00  0.00          C
ATOM     40  O   VAL    21      17.199  14.857  27.048  1.00  0.00          O
ATOM     41  N   ILE    22      14.996  15.160  26.973  1.00  0.00          N
ATOM     42  CA  ILE    22      15.068  16.516  27.483  1.00  0.00          C
ATOM     43  C   ILE    22      15.256  17.603  26.457  1.00  0.00          C
ATOM     44  O   ILE    22      15.178  18.765  26.754  1.00  0.00          O
ATOM     45  N   LEU    23      15.514  17.315  25.205  1.00  0.00          N
ATOM     46  CA  LEU    23      15.754  18.308  24.180  1.00  0.00          C
ATOM     47  C   LEU    23      14.559  18.617  23.318  1.00  0.00          C
ATOM     48  O   LEU    23      13.800  17.733  22.981  1.00  0.00          O
ATOM     49  N   GLN    24      14.404  19.861  22.946  1.00  0.00          N
ATOM     50  CA  GLN    24      13.368  20.293  22.082  1.00  0.00          C
ATOM     51  C   GLN    24      13.704  19.924  20.692  1.00  0.00          C
ATOM     52  O   GLN    24      14.782  19.423  20.464  1.00  0.00          O
ATOM     53  N   ARG    25      12.752  20.130  19.813  1.00  0.00          N
ATOM     54  CA  ARG    25      12.882  19.687  18.436  1.00  0.00          C
ATOM     55  C   ARG    25      13.996  20.229  17.572  1.00  0.00          C
ATOM     56  O   ARG    25      14.249  19.666  16.517  1.00  0.00          O
ATOM     57  N   GLU    26      14.571  21.367  17.951  1.00  0.00          N
ATOM     58  CA  GLU    26      15.680  21.978  17.216  1.00  0.00          C
ATOM     59  C   GLU    26      16.994  21.693  17.931  1.00  0.00          C
ATOM     60  O   GLU    26      18.065  22.080  17.516  1.00  0.00          O
ATOM     61  N   VAL    27      16.921  20.999  19.060  1.00  0.00          N
ATOM     62  CA  VAL    27      18.107  20.667  19.784  1.00  0.00          C
ATOM     63  C   VAL    27      18.687  21.799  20.573  1.00  0.00          C
ATOM     64  O   VAL    27      19.744  21.575  21.125  1.00  0.00          O
ATOM     65  N   LYS    28      18.043  22.962  20.694  1.00  0.00          N
ATOM     66  CA  LYS    28      18.611  24.062  21.483  1.00  0.00          C
ATOM     67  C   LYS    28      18.073  24.171  22.895  1.00  0.00          C
ATOM     68  O   LYS    28      18.735  24.482  23.855  1.00  0.00          O
ATOM     69  N   ASP    29      16.784  23.902  23.095  1.00  0.00          N
ATOM     70  CA  ASP    29      16.180  23.965  24.421  1.00  0.00          C
ATOM     71  C   ASP    29      16.282  22.674  25.185  1.00  0.00          C
ATOM     72  O   ASP    29      16.063  21.581  24.659  1.00  0.00          O
ATOM     73  N   PRO    30      16.606  22.788  26.435  1.00  0.00          N
ATOM     74  CA  PRO    30      16.760  21.648  27.301  1.00  0.00          C
ATOM     75  C   PRO    30      15.868  21.682  28.552  1.00  0.00          C
ATOM     76  O   PRO    30      15.803  22.716  29.219  1.00  0.00          O
ATOM     77  N   ARG    31      15.223  20.574  28.926  1.00  0.00          N
ATOM     78  CA  ARG    31      14.452  20.532  30.136  1.00  0.00          C
ATOM     79  C   ARG    31      13.001  20.916  29.962  1.00  0.00          C
ATOM     80  O   ARG    31      12.609  21.416  28.925  1.00  0.00          O
ATOM     81  N   ILE    32      12.288  20.650  31.043  1.00  0.00          N
ATOM     82  CA  ILE    32      10.867  20.999  31.096  1.00  0.00          C
ATOM     83  C   ILE    32      10.587  22.480  30.757  1.00  0.00          C
ATOM     84  O   ILE    32       9.576  22.814  30.130  1.00  0.00          O
ATOM     85  N   GLY    33      11.534  23.357  31.134  1.00  0.00          N
ATOM     86  CA  GLY    33      11.432  24.787  30.941  1.00  0.00          C
ATOM     87  C   GLY    33      12.151  25.298  29.736  1.00  0.00          C
ATOM     88  O   GLY    33      12.091  26.479  29.402  1.00  0.00          O
ATOM     89  N   MET    34      12.799  24.401  29.046  1.00  0.00          N
ATOM     90  CA  MET    34      13.493  24.736  27.811  1.00  0.00          C
ATOM     91  C   MET    34      14.552  25.838  27.883  1.00  0.00          C
ATOM     92  O   MET    34      14.468  26.794  27.145  1.00  0.00          O
ATOM     93  N   VAL    35      15.506  25.683  28.773  1.00  0.00          N
ATOM     94  CA  VAL    35      16.618  26.606  28.812  1.00  0.00          C
ATOM     95  C   VAL    35      17.409  26.455  27.477  1.00  0.00          C
ATOM     96  O   VAL    35      17.830  25.369  27.073  1.00  0.00          O
ATOM     97  N   THR    36      17.674  27.586  26.807  1.00  0.00          N
ATOM     98  CA  THR    36      18.398  27.605  25.545  1.00  0.00          C
ATOM     99  C   THR    36      19.922  27.542  25.767  1.00  0.00          C
ATOM    100  O   THR    36      20.518  28.447  26.338  1.00  0.00          O
ATOM    101  N   VAL    37      20.465  26.421  25.298  1.00  0.00          N
ATOM    102  CA  VAL    37      21.867  26.056  25.411  1.00  0.00          C
ATOM    103  C   VAL    37      22.738  27.106  24.777  1.00  0.00          C
ATOM    104  O   VAL    37      23.881  27.220  25.237  1.00  0.00          O
ATOM    105  N   SER    38      22.205  27.816  23.759  1.00  0.00          N
ATOM    106  CA  SER    38      22.963  28.899  23.090  1.00  0.00          C
ATOM    107  C   SER    38      23.158  30.096  23.983  1.00  0.00          C
ATOM    108  O   SER    38      24.084  30.850  23.764  1.00  0.00          O
ATOM    109  N   ASP    39      22.295  30.296  24.992  1.00  0.00          N
ATOM    110  CA  ASP    39      22.406  31.448  25.884  1.00  0.00          C
ATOM    111  C   ASP    39      22.871  31.141  27.273  1.00  0.00          C
ATOM    112  O   ASP    39      23.330  31.995  27.964  1.00  0.00          O
ATOM    113  N   VAL    40      22.569  29.956  27.754  1.00  0.00          N
ATOM    114  CA  VAL    40      22.911  29.516  29.066  1.00  0.00          C
ATOM    115  C   VAL    40      23.302  28.052  29.031  1.00  0.00          C
ATOM    116  O   VAL    40      22.569  27.241  28.459  1.00  0.00          O
ATOM    117  N   GLU    41      24.412  27.682  29.705  1.00  0.00          N
ATOM    118  CA  GLU    41      24.760  26.272  29.762  1.00  0.00          C
ATOM    119  C   GLU    41      23.713  25.600  30.691  1.00  0.00          C
ATOM    120  O   GLU    41      23.537  26.032  31.844  1.00  0.00          O
ATOM    121  N   VAL    42      23.111  24.507  30.197  1.00  0.00          N
ATOM    122  CA  VAL    42      22.098  23.833  30.980  1.00  0.00          C
ATOM    123  C   VAL    42      22.648  23.025  32.135  1.00  0.00          C
ATOM    124  O   VAL    42      23.612  22.330  32.001  1.00  0.00          O
ATOM    125  N   SER    43      22.063  23.176  33.278  1.00  0.00          N
ATOM    126  CA  SER    43      22.401  22.488  34.465  1.00  0.00          C
ATOM    127  C   SER    43      21.327  21.456  34.840  1.00  0.00          C
ATOM    128  O   SER    43      20.115  21.675  34.630  1.00  0.00          O
ATOM    129  N   SER    44      21.764  20.339  35.453  1.00  0.00          N
ATOM    130  CA  SER    44      20.904  19.247  35.940  1.00  0.00          C
ATOM    131  C   SER    44      20.374  18.303  34.842  1.00  0.00          C
ATOM    132  O   SER    44      20.696  18.382  33.644  1.00  0.00          O
ATOM    133  N   ASP    45      19.543  17.346  35.295  1.00  0.00          N
ATOM    134  CA  ASP    45      18.790  16.360  34.520  1.00  0.00          C
ATOM    135  C   ASP    45      17.616  17.203  34.008  1.00  0.00          C
ATOM    136  O   ASP    45      17.316  18.278  34.584  1.00  0.00          O
ATOM    137  N   LEU    46      17.003  16.715  32.945  1.00  0.00          N
ATOM    138  CA  LEU    46      16.024  17.491  32.258  1.00  0.00          C
ATOM    139  C   LEU    46      14.742  17.715  32.994  1.00  0.00          C
ATOM    140  O   LEU    46      13.979  18.611  32.641  1.00  0.00          O
ATOM    141  N   SER    47      14.491  16.877  33.959  1.00  0.00          N
ATOM    142  CA  SER    47      13.233  16.971  34.660  1.00  0.00          C
ATOM    143  C   SER    47      13.328  17.042  36.151  1.00  0.00          C
ATOM    144  O   SER    47      12.375  16.651  36.845  1.00  0.00          O
ATOM    145  N   TYR    48      14.457  17.622  36.618  1.00  0.00          N
ATOM    146  CA  TYR    48      14.713  17.733  38.065  1.00  0.00          C
ATOM    147  C   TYR    48      14.716  19.118  38.653  1.00  0.00          C
ATOM    148  O   TYR    48      14.544  20.084  37.908  1.00  0.00          O
ATOM    149  N   ALA    49      14.905  19.174  39.962  1.00  0.00          N
ATOM    150  CA  ALA    49      14.931  20.413  40.729  1.00  0.00          C
ATOM    151  C   ALA    49      16.027  21.398  40.281  1.00  0.00          C
ATOM    152  O   ALA    49      15.861  22.613  40.316  1.00  0.00          O
ATOM    153  N   LYS    50      17.177  20.895  39.843  1.00  0.00          N
ATOM    154  CA  LYS    50      18.261  21.775  39.393  1.00  0.00          C
ATOM    155  C   LYS    50      17.871  22.554  38.154  1.00  0.00          C
ATOM    156  O   LYS    50      18.068  23.765  38.003  1.00  0.00          O
ATOM    157  N   ILE    51      17.297  21.835  37.257  1.00  0.00          N
ATOM    158  CA  ILE    51      16.788  22.411  36.031  1.00  0.00          C
ATOM    159  C   ILE    51      15.667  23.454  36.272  1.00  0.00          C
ATOM    160  O   ILE    51      15.707  24.555  35.767  1.00  0.00          O
TER
END


