
PFRMAT TS 
TARGET T0110
AUTHOR 1395-2891-7461
REMARK
REMARK Ugo Bastolla, Jochen Farwer and Ernst-Walter Knapp
REMARK Freie Universitaet Berlin, Institute of Crystallography
REMARK
METHOD For all fragments of the given sequence with length
METHOD between 35 and 60 residues, decoy structures were generated by
METHOD threading using a set of 1015 proteins (Hobohm U, Sander C.
METHOD Enlarged representative set of protein structure.
METHOD Protein Sci 1994; 3: 522-524. List available at
METHOD ftp://ftp.embl-heidelberg.de/pub/databases/
METHOD protein_extras/pdb_select/recent.pdb_select).
METHOD For all fragments the decoy structure of lowest energy was determined
METHOD using a modification of the energy function described in
METHOD (Bastolla U, Vendruscolo M,
METHOD Knapp EW.
METHOD A statistical mechanical method to optimize energy functions for
METHOD protein folding.
METHOD Proc Natl Acad Sci USA 2000, 97: 3977-3981).
METHOD An alignment was chosen using the z score, the alpha value and
METHOD a secondary structure prediction made by NNSSP
METHOD (Salamov A.A., Solovyev V.V.
METHOD Prediction of protein secondary sturcture by combining
METHOD nearest-neighbor algorithms and multiple sequence alignments.
METHOD J.Mol.Biol.,1995, 247, 11-15.).
MODEL 3
PARENT 1btl
ATOM      1  N   ASP    58      -5.527  -7.680  51.087  1.00  0.00          N
ATOM      2  CA  ASP    58      -5.157  -6.285  51.269  1.00  0.00          C
ATOM      3  C   ASP    58      -6.440  -5.477  51.091  1.00  0.00          C
ATOM      4  O   ASP    58      -7.394  -6.019  50.535  1.00  0.00          O
ATOM      5  N   HIS    59      -6.537  -4.208  51.548  1.00  0.00          N
ATOM      6  CA  HIS    59      -7.714  -3.337  51.372  1.00  0.00          C
ATOM      7  C   HIS    59      -7.312  -1.989  50.795  1.00  0.00          C
ATOM      8  O   HIS    59      -6.258  -1.471  51.184  1.00  0.00          O
ATOM      9  N   ASP    60      -8.104  -1.387  49.911  1.00  0.00          N
ATOM     10  CA  ASP    60      -7.854  -0.043  49.401  1.00  0.00          C
ATOM     11  C   ASP    60      -7.813   1.038  50.501  1.00  0.00          C
ATOM     12  O   ASP    60      -6.998   1.977  50.491  1.00  0.00          O
ATOM     13  N   GLU    61      -8.701   0.895  51.482  1.00  0.00          N
ATOM     14  CA  GLU    61      -8.795   1.861  52.557  1.00  0.00          C
ATOM     15  C   GLU    61      -7.779   1.707  53.679  1.00  0.00          C
ATOM     16  O   GLU    61      -7.840   2.523  54.595  1.00  0.00          O
ATOM     17  N   MET    62      -6.837   0.758  53.712  1.00  0.00          N
ATOM     18  CA  MET    62      -5.883   0.623  54.818  1.00  0.00          C
ATOM     19  C   MET    62      -4.897   1.801  54.859  1.00  0.00          C
ATOM     20  O   MET    62      -4.392   2.255  53.820  1.00  0.00          O
ATOM     21  N   ALA    63      -4.620   2.345  56.052  1.00  0.00          N
ATOM     22  CA  ALA    63      -3.735   3.491  56.167  1.00  0.00          C
ATOM     23  C   ALA    63      -2.307   3.065  56.500  1.00  0.00          C
ATOM     24  O   ALA    63      -2.083   2.229  57.380  1.00  0.00          O
ATOM     25  N   ILE    64      -1.321   3.673  55.829  1.00  0.00          N
ATOM     26  CA  ILE    64       0.087   3.414  56.042  1.00  0.00          C
ATOM     27  C   ILE    64       0.737   4.663  56.667  1.00  0.00          C
ATOM     28  O   ILE    64       0.537   5.801  56.223  1.00  0.00          O
ATOM     29  N   GLU    65       1.482   4.451  57.764  1.00  0.00          N
ATOM     30  CA  GLU    65       2.176   5.546  58.452  1.00  0.00          C
ATOM     31  C   GLU    65       3.657   5.424  58.075  1.00  0.00          C
ATOM     32  O   GLU    65       4.163   4.310  57.841  1.00  0.00          O
ATOM     33  N   GLN    66       4.385   6.514  57.978  1.00  0.00          N
ATOM     34  CA  GLN    66       5.790   6.533  57.613  1.00  0.00          C
ATOM     35  C   GLN    66       6.406   7.778  58.248  1.00  0.00          C
ATOM     36  O   GLN    66       5.663   8.595  58.786  1.00  0.00          O
ATOM     37  N   GLY    67       7.701   8.041  58.153  1.00  0.00          N
ATOM     38  CA  GLY    67       8.326   9.181  58.811  1.00  0.00          C
ATOM     39  C   GLY    67       9.296   9.888  57.864  1.00  0.00          C
ATOM     40  O   GLY    67       9.544   9.414  56.742  1.00  0.00          O
ATOM     41  N   MET    68       9.963  10.971  58.300  1.00  0.00          N
ATOM     42  CA  MET    68      10.916  11.717  57.474  1.00  0.00          C
ATOM     43  C   MET    68      12.088  10.876  56.982  1.00  0.00          C
ATOM     44  O   MET    68      12.613  11.089  55.904  1.00  0.00          O
ATOM     45  N   LYS    69      12.485   9.891  57.770  1.00  0.00          N
ATOM     46  CA  LYS    69      13.534   8.942  57.428  1.00  0.00          C
ATOM     47  C   LYS    69      13.252   8.145  56.130  1.00  0.00          C
ATOM     48  O   LYS    69      14.162   7.661  55.464  1.00  0.00          O
ATOM     49  N   GLY    70      11.993   7.991  55.716  1.00  0.00          N
ATOM     50  CA  GLY    70      11.642   7.237  54.533  1.00  0.00          C
ATOM     51  C   GLY    70      11.673   8.074  53.270  1.00  0.00          C
ATOM     52  O   GLY    70      11.592   7.501  52.179  1.00  0.00          O
ATOM     53  N   LEU    71      11.754   9.401  53.355  1.00  0.00          N
ATOM     54  CA  LEU    71      11.603  10.215  52.171  1.00  0.00          C
ATOM     55  C   LEU    71      12.814  10.165  51.280  1.00  0.00          C
ATOM     56  O   LEU    71      13.932  10.308  51.781  1.00  0.00          O
ATOM     57  N   GLU    72      12.669   9.904  49.971  1.00  0.00          N
ATOM     58  CA  GLU    72      13.810   9.994  49.044  1.00  0.00          C
ATOM     59  C   GLU    72      13.531  11.124  48.019  1.00  0.00          C
ATOM     60  O   GLU    72      12.483  11.792  48.077  1.00  0.00          O
ATOM     61  N   LYS    73      14.472  11.420  47.120  1.00  0.00          N
ATOM     62  CA  LYS    73      14.298  12.439  46.079  1.00  0.00          C
ATOM     63  C   LYS    73      13.024  12.259  45.224  1.00  0.00          C
ATOM     64  O   LYS    73      12.618  11.144  44.904  1.00  0.00          O
ATOM     65  N   ALA    74      12.395  13.387  44.890  1.00  0.00          N
ATOM     66  CA  ALA    74      11.172  13.521  44.110  1.00  0.00          C
ATOM     67  C   ALA    74      10.002  12.732  44.708  1.00  0.00          C
ATOM     68  O   ALA    74       9.489  11.702  44.250  1.00  0.00          O
ATOM     69  N   SER    75       9.503  13.370  45.758  1.00  0.00          N
ATOM     70  CA  SER    75       8.360  12.876  46.490  1.00  0.00          C
ATOM     71  C   SER    75       7.310  13.978  46.697  1.00  0.00          C
ATOM     72  O   SER    75       6.938  14.253  47.843  1.00  0.00          O
ATOM     73  N   PRO    76       6.690  14.582  45.651  1.00  0.00          N
ATOM     74  CA  PRO    76       5.828  15.769  45.780  1.00  0.00          C
ATOM     75  C   PRO    76       4.564  15.590  46.590  1.00  0.00          C
ATOM     76  O   PRO    76       4.081  16.536  47.203  1.00  0.00          O
ATOM     77  N   TYR    77       3.974  14.381  46.603  1.00  0.00          N
ATOM     78  CA  TYR    77       2.746  14.119  47.360  1.00  0.00          C
ATOM     79  C   TYR    77       3.032  13.564  48.778  1.00  0.00          C
ATOM     80  O   TYR    77       2.381  14.014  49.743  1.00  0.00          O
ATOM     81  N   ILE    78       3.968  12.604  48.942  1.00  0.00          N
ATOM     82  CA  ILE    78       4.157  11.969  50.251  1.00  0.00          C
ATOM     83  C   ILE    78       4.793  12.924  51.251  1.00  0.00          C
ATOM     84  O   ILE    78       4.531  12.856  52.475  1.00  0.00          O
ATOM     85  N   ARG    79       5.595  13.875  50.753  1.00  0.00          N
ATOM     86  CA  ARG    79       6.205  14.778  51.735  1.00  0.00          C
ATOM     87  C   ARG    79       5.230  15.774  52.365  1.00  0.00          C
ATOM     88  O   ARG    79       5.609  16.439  53.337  1.00  0.00          O
ATOM     89  N   SER    80       4.004  15.901  51.833  1.00  0.00          N
ATOM     90  CA  SER    80       2.982  16.784  52.358  1.00  0.00          C
ATOM     91  C   SER    80       2.058  16.085  53.350  1.00  0.00          C
ATOM     92  O   SER    80       1.081  16.699  53.817  1.00  0.00          O
ATOM     93  N   LEU    81       2.271  14.790  53.674  1.00  0.00          N
ATOM     94  CA  LEU    81       1.335  14.065  54.510  1.00  0.00          C
ATOM     95  C   LEU    81       1.991  13.249  55.609  1.00  0.00          C
ATOM     96  O   LEU    81       1.399  12.281  56.121  1.00  0.00          O
ATOM     97  N   LEU    82       3.172  13.668  56.059  1.00  0.00          N
ATOM     98  CA  LEU    82       3.885  13.006  57.148  1.00  0.00          C
ATOM     99  C   LEU    82       3.105  12.846  58.450  1.00  0.00          C
ATOM    100  O   LEU    82       3.317  11.852  59.154  1.00  0.00          O
ATOM    101  N   GLY    83       2.213  13.787  58.809  1.00  0.00          N
ATOM    102  CA  GLY    83       1.497  13.732  60.081  1.00  0.00          C
ATOM    103  C   GLY    83       0.437  12.646  60.175  1.00  0.00          C
ATOM    104  O   GLY    83       0.332  11.970  61.208  1.00  0.00          O
ATOM    105  N   LYS    84      -0.396  12.507  59.139  1.00  0.00          N
ATOM    106  CA  LYS    84      -1.482  11.549  59.225  1.00  0.00          C
ATOM    107  C   LYS    84      -1.372  10.315  58.333  1.00  0.00          C
ATOM    108  O   LYS    84      -2.264   9.457  58.408  1.00  0.00          O
ATOM    109  N   ALA    85      -0.358  10.191  57.490  1.00  0.00          N
ATOM    110  CA  ALA    85      -0.236   9.036  56.605  1.00  0.00          C
ATOM    111  C   ALA    85      -1.157   9.087  55.391  1.00  0.00          C
ATOM    112  O   ALA    85      -1.893  10.053  55.177  1.00  0.00          O
ATOM    113  N   MET    86      -1.184   8.020  54.582  1.00  0.00          N
ATOM    114  CA  MET    86      -1.966   7.948  53.344  1.00  0.00          C
ATOM    115  C   MET    86      -2.537   6.534  53.197  1.00  0.00          C
ATOM    116  O   MET    86      -1.967   5.591  53.770  1.00  0.00          O
ATOM    117  N   ARG    87      -3.652   6.327  52.519  1.00  0.00          N
ATOM    118  CA  ARG    87      -4.217   4.988  52.315  1.00  0.00          C
ATOM    119  C   ARG    87      -3.555   4.295  51.104  1.00  0.00          C
ATOM    120  O   ARG    87      -2.892   4.983  50.302  1.00  0.00          O
ATOM    121  N   LEU    88      -3.714   2.962  50.928  1.00  0.00          N
ATOM    122  CA  LEU    88      -3.182   2.218  49.769  1.00  0.00          C
ATOM    123  C   LEU    88      -3.689   2.827  48.456  1.00  0.00          C
ATOM    124  O   LEU    88      -2.921   3.046  47.506  1.00  0.00          O
ATOM    125  N   ARG    89      -4.963   3.201  48.366  1.00  0.00          N
ATOM    126  CA  ARG    89      -5.542   3.894  47.222  1.00  0.00          C
ATOM    127  C   ARG    89      -4.818   5.213  46.938  1.00  0.00          C
ATOM    128  O   ARG    89      -4.506   5.526  45.774  1.00  0.00          O
ATOM    129  N   ILE    90      -4.557   6.028  47.976  1.00  0.00          N
ATOM    130  CA  ILE    90      -3.864   7.287  47.765  1.00  0.00          C
ATOM    131  C   ILE    90      -2.419   7.103  47.331  1.00  0.00          C
ATOM    132  O   ILE    90      -1.908   7.913  46.543  1.00  0.00          O
ATOM    133  N   VAL    91      -1.724   6.048  47.809  1.00  0.00          N
ATOM    134  CA  VAL    91      -0.340   5.818  47.415  1.00  0.00          C
ATOM    135  C   VAL    91      -0.246   5.304  45.970  1.00  0.00          C
ATOM    136  O   VAL    91       0.642   5.741  45.230  1.00  0.00          O
ATOM    137  N   PRO    92      -1.123   4.423  45.473  1.00  0.00          N
ATOM    138  CA  PRO    92      -1.106   4.057  44.050  1.00  0.00          C
ATOM    139  C   PRO    92      -1.489   5.258  43.164  1.00  0.00          C
ATOM    140  O   PRO    92      -0.852   5.451  42.114  1.00  0.00          O
ATOM    141  N   GLU    93      -2.496   6.090  43.524  1.00  0.00          N
ATOM    142  CA  GLU    93      -2.752   7.326  42.789  1.00  0.00          C
ATOM    143  C   GLU    93      -1.496   8.222  42.715  1.00  0.00          C
ATOM    144  O   GLU    93      -1.202   8.760  41.636  1.00  0.00          O
ATOM    145  N   ILE    94      -0.728   8.430  43.803  1.00  0.00          N
ATOM    146  CA  ILE    94       0.468   9.280  43.779  1.00  0.00          C
ATOM    147  C   ILE    94       1.620   8.749  42.905  1.00  0.00          C
ATOM    148  O   ILE    94       2.344   9.476  42.187  1.00  0.00          O
ATOM    149  N   ARG    95       1.843   7.444  43.028  1.00  0.00          N
ATOM    150  CA  ARG    95       2.885   6.745  42.274  1.00  0.00          C
ATOM    151  C   ARG    95       2.604   6.784  40.767  1.00  0.00          C
ATOM    152  O   ARG    95       3.530   7.032  39.986  1.00  0.00          O
ATOM    153  N   PHE    96       1.369   6.572  40.305  1.00  0.00          N
ATOM    154  CA  PHE    96       1.066   6.622  38.873  1.00  0.00          C
ATOM    155  C   PHE    96       0.822   8.038  38.312  1.00  0.00          C
ATOM    156  O   PHE    96       1.440   8.367  37.279  1.00  0.00          O
ATOM    157  N   ILE    97      -0.006   8.906  38.931  1.00  0.00          N
ATOM    158  CA  ILE    97      -0.325  10.203  38.308  1.00  0.00          C
ATOM    159  C   ILE    97       0.757  11.291  38.479  1.00  0.00          C
ATOM    160  O   ILE    97       0.872  12.187  37.609  1.00  0.00          O
ATOM    161  N   TYR    98       1.565  11.223  39.567  1.00  0.00          N
ATOM    162  CA  TYR    98       2.651  12.154  39.857  1.00  0.00          C
ATOM    163  C   TYR    98       4.069  11.560  39.875  1.00  0.00          C
ATOM    164  O   TYR    98       5.040  12.305  40.075  1.00  0.00          O
ATOM    165  N   ASP    99       4.275  10.234  39.669  1.00  0.00          N
ATOM    166  CA  ASP    99       5.586   9.568  39.680  1.00  0.00          C
ATOM    167  C   ASP    99       6.324   9.663  41.027  1.00  0.00          C
ATOM    168  O   ASP    99       7.567   9.654  41.106  1.00  0.00          O
ATOM    169  N   GLN   100       5.561   9.759  42.124  1.00  0.00          N
ATOM    170  CA  GLN   100       6.151   9.865  43.481  1.00  0.00          C
ATOM    171  C   GLN   100       7.028   8.649  43.846  1.00  0.00          C
ATOM    172  O   GLN   100       6.569   7.488  43.889  1.00  0.00          O
ATOM    173  N   SER   101       8.309   8.894  44.187  1.00  0.00          N
ATOM    174  CA  SER   101       9.282   7.840  44.496  1.00  0.00          C
ATOM    175  C   SER   101       9.136   7.205  45.863  1.00  0.00          C
ATOM    176  O   SER   101       9.272   5.975  45.992  1.00  0.00          O
ATOM    177  N   LEU   102       8.858   7.958  46.927  1.00  0.00          N
ATOM    178  CA  LEU   102       8.611   7.319  48.233  1.00  0.00          C
ATOM    179  C   LEU   102       7.328   6.451  48.231  1.00  0.00          C
ATOM    180  O   LEU   102       7.292   5.383  48.861  1.00  0.00          O
ATOM    181  N   VAL   103       6.244   6.833  47.537  1.00  0.00          N
ATOM    182  CA  VAL   103       5.036   6.013  47.476  1.00  0.00          C
ATOM    183  C   VAL   103       5.311   4.627  46.909  1.00  0.00          C
ATOM    184  O   VAL   103       4.809   3.630  47.437  1.00  0.00          O
ATOM    185  N   GLU   104       6.147   4.555  45.879  1.00  0.00          N
ATOM    186  CA  GLU   104       6.495   3.267  45.282  1.00  0.00          C
ATOM    187  C   GLU   104       7.305   2.411  46.242  1.00  0.00          C
ATOM    188  O   GLU   104       7.025   1.209  46.361  1.00  0.00          O
ATOM    189  N   GLY   105       8.320   2.961  46.939  1.00  0.00          N
ATOM    190  CA  GLY   105       9.050   2.167  47.956  1.00  0.00          C
ATOM    191  C   GLY   105       8.129   1.663  49.083  1.00  0.00          C
ATOM    192  O   GLY   105       8.285   0.513  49.533  1.00  0.00          O
ATOM    193  N   MET   106       7.133   2.445  49.565  1.00  0.00          N
ATOM    194  CA  MET   106       6.234   1.964  50.612  1.00  0.00          C
ATOM    195  C   MET   106       5.362   0.834  50.097  1.00  0.00          C
ATOM    196  O   MET   106       5.129  -0.141  50.829  1.00  0.00          O
ATOM    197  N   ARG   107       4.863   0.884  48.860  1.00  0.00          N
ATOM    198  CA  ARG   107       4.052  -0.223  48.330  1.00  0.00          C
ATOM    199  C   ARG   107       4.912  -1.460  48.067  1.00  0.00          C
ATOM    200  O   ARG   107       4.442  -2.590  48.274  1.00  0.00          O
TER
END


