
PFRMAT AL
TARGET T0111
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=9.69 
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: mle
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1muc_A
S   1     A     4
K   2     L     5
I   3     I     6
V   4     E     7
K   5     R     8
I   6     I     9
I   7     D    10
G   8     A    11
R   9     I    12
E  10     I    13
I  11     V    14
I  12     D    15
D  13     L    16
S  14     P    17
R  15     T    18
G  16     I    19
N  17     R    20
E  27     Q    30
G  28     Q    31
G  29     Q    32
F  30     T    33
V  31     L    34
G  32     V    35
M  33     V    36
A  34     L    37
A  35     R    38
A  36     V    39
P  37     R    40
S  38     C    41
S  41     S    42
T  42     D    43
G  43     G    44
S  44     V    45
R  45     E    46
E  46     G    47
A  47     I    48
L  48     G    49
E  49     E    50
L  50     A    51
R  51     T    52
D  52     T    53
G  53     I    54
D  54     G    55
K  55     G    56
S  56     L    57
R  57     A    58
F  58     Y    59
L  59     G    60
G  60     Y    61
K  61     E    62
G  62     S    63
V  63     P    64
T  64     E    65
K  65     G    66
A  66     I    67
V  67     K    68
A  68     A    69
A  69     N    70
V  70     I    71
N  71     D    72
G  72     A    73
P  73     H    74
I  74     L    75
A  75     A    76
Q  76     P    77
A  77     A    78
L  78     L    79
I  79     I    80
G  80     G    81
K  81     L    82
D  82     A    83
A  83     A    84
K  84     D    85
D  85     N    86
Q  86     I    87
A  87     N    88
G  88     A    89
I  89     A    90
D  90     M    91
K  91     L    92
I  92     K    93
M  93     L    94
I  94     D    95
D  95     K    96
L  96     L    97
D  97     A    98
K 102     K    99
S 103     G   100
G 106     N   101
A 107     T   102
N 108     F   103
A 109     A   104
I 110     K   105
L 111     S   106
A 112     G   107
V 113     I   108
S 114     E   109
L 115     S   110
A 116     A   111
N 117     L   112
A 118     L   113
K 119     D   114
A 120     A   115
A 121     Q   116
A 122     G   117
A 123     K   118
A 124     R   119
K 125     L   120
G 126     G   121
M 127     L   122
P 128     P   123
L 129     V   124
Y 130     S   125
E 131     E   126
H 132     L   127
I 133     L   128
G 156     G   129
E 157     G   130
H 158     R   131
A 159     V   132
D 160     R   133
N 161     D   134
N 162     S   135
V 163     L   136
D 164     E   137
I 165     V   138
Q 166     A   139
E 167     W   140
F 168     T   141
M 169     L   142
I 170     A   143
Q 171     S   144
P 172     G   145
V 173     D   146
G 174     T   147
A 175     A   148
K 176     R   149
T 177     D   150
V 178     I   151
K 179     A   152
E 180     E   153
A 181     A   154
I 182     R   155
R 183     H   156
M 184     M   157
G 185     L   158
S 186     E   159
E 187     I   160
V 188     R   161
F 189     R   162
H 190     H   163
K 194     R   164
V 195     V   165
L 196     F   166
K 197     K   167
A 198     L   168
K 199     K   169
G 200     I   170
M 201     G   171
N 202     A   172
P 213     N   173
N 214     P   174
L 215     V   175
G 216     E   176
S 217     Q   177
N 218     D   178
A 219     L   179
E 220     K   180
A 221     H   181
L 222     V   182
A 223     V   183
V 224     T   184
I 225     I   185
A 226     K   186
E 227     R   187
A 228     E   188
V 229     L   189
G 237     G   190
K 238     D   191
D 239     S   192
I 240     A   193
T 241     S   194
L 242     V   195
A 243     R   196
M 244     V   197
D 245     D   198
C 246     V   199
N 264     N   200
K 265     Q   201
A 266     Y   202
F 267     W   203
T 268     D   204
S 269     E   205
E 270     S   206
E 271     Q   207
F 272     A   208
T 273     I   209
H 274     R   210
F 275     A   211
L 276     C   212
E 277     Q   213
E 278     V   214
L 279     L   215
T 280     G   216
K 281     D   217
Q 282     N   218
P 284     G   219
I 285     I   220
V 286     D   221
S 287     L   222
I 288     I   223
E 289     E   224
D 290     Q   225
G 291     P   226
L 292     I   227
D 293     S   228
E 294     R   229
S 295     I   230
D 296     N   231
W 297     R   232
D 298     G   233
G 299     G   234
F 300     Q   235
A 301     V   236
Y 302     R   237
Q 303     L   238
T 304     N   239
K 305     Q   240
V 306     R   241
L 307     T   242
G 308     P   243
D 309     A   244
K 310     P   245
I 311     I   246
Q 312     M   247
L 313     A   248
D 317     D   249
L 318     E   250
F 319     S   251
V 320     I   252
T 321     E   253
N 322     S   254
T 323     V   255
K 324     E   256
I 325     D   257
L 326     A   258
K 327     F   259
E 328     S   260
G 329     L   261
I 330     A   262
E 331     A   263
K 332     D   264
G 333     G   265
I 334     A   266
A 335     A   267
N 336     S   268
S 337     I   269
I 338     F   270
L 339     A   271
I 340     L   272
K 341     K   273
F 342     I   274
N 343     A   275
Q 344     K   276
I 345     N   277
G 346     G   278
S 347     G   279
L 348     P   280
T 349     R   281
E 350     A   282
T 351     V   283
L 352     L   284
A 353     R   285
A 354     T   286
I 355     A   287
K 356     Q   288
M 357     I   289
A 358     A   290
K 359     E   291
D 360     A   292
A 361     A   293
G 362     G   294
I 367     I   295
S 368     G   296
H 369     L   297
R 370     Y   298
S 371     G   299
G 372     G   300
E 373     T   301
T 374     M   302
E 375     L   303
D 376     E   304
A 377     G   305
T 378     S   306
I 379     I   307
A 380     G   308
D 381     T   309
L 382     L   310
A 383     A   311
V 384     S   312
G 385     A   313
T 386     H   314
A 387     A   315
A 388     F   316
G 389     L   317
Q 390     T   318
I 391     L   319
K 392     R   320
T 393     Q   321
G 394     G   330
S 395     P   331
M 396     L   332
S 397     L   333
R 398     L   334
S 399     T   335
D 400     E   336
R 401     E   337
V 402     I   338
A 403     V   339
K 404     N   340
Y 405     R   346
N 406     D   347
Q 407     F   348
L 408     Q   349
I 409     L   350
R 410     H   351
I 411     I   352
E 412     P   353
E 413     R   354
A 414     T   355
L 415     P   356
G 416     G   357
E 417     L   358
K 418     G   359
A 419     L   360
P 420     T   361
Y 421     L   362
N 422     D   363
G 423     E   364
R 424     Q   365
K 425     R   366
E 426     L   367
I 427     A   368
K 428     R   369
G 429     F   370
Q 430     A   371
A 431     R   372
TER
END

