
PFRMAT AL
TARGET T0111
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1pdz
K    2 S 1
I    3 I 2
V    4 T 3
K    5 K 4
I    6 V 5
I    7 F 6
G    8 A 7
R    9 R 8
E   10 T 9
I   11 I 10
I   12 F 11
D   13 D 12
S   14 S 13
R   15 R 14
G   16 G 15
N   17 N 16
P   18 P 17
T   19 T 18
V   20 V 19
E   21 E 20
A   22 V 21
E   23 D 22
V   24 L 23
H   25 Y 24
L   26 T 25
E   27 S 26
G   28 K 27
G   29 G 28
F   30 L 29
V   31 F 30
M   33 R 31
A   34 A 32
A   35 A 33
A   36 V 34
P   37 P 35
S   38 S 36
G   39 G 37
A   40 A 38
S   41 S 39
T   42 T 40
G   43 G 41
S   44 V 42
R   45 H 43
E   46 E 44
A   47 A 45
L   48 L 46
E   49 E 47
L   50 M 48
R   51 R 49
D   52 D 50
G   53 G 51
D   54 D 52
K   55 K 53
S   56 S 54
R   57 K 55
F   58 Y 56
L   59 H 57
G   60 G 58
K   61 K 59
G   62 S 60
V   63 V 61
T   64 F 62
K   65 N 63
A   66 A 64
V   67 V 65
A   68 K 66
A   69 N 67
V   70 V 68
N   71 N 69
G   72 D 70
P   73 V 71
I   74 I 72
A   75 V 73
Q   76 P 74
A   77 E 75
L   78 I 76
I   79 I 77
G   80 G 80
K   81 L 81
D   82 K 82
A   83 V 83
K   84 T 84
D   85 Q 85
Q   86 Q 86
A   87 K 87
G   88 E 88
I   89 C 89
D   90 D 90
K   91 E 91
I   92 F 92
M   93 M 93
I   94 C 94
D   95 K 95
L   96 L 96
D   97 D 97
G   98 G 98
T   99 T 99
E  100 E 100
N  101 N 101
K  102 K 102
S  103 S 103
K  104 S 104
F  105 L 105
G  106 G 106
A  107 A 107
N  108 N 108
A  109 A 109
I  110 I 110
L  111 L 111
A  112 G 112
V  113 V 113
S  114 S 114
L  115 L 115
A  116 A 116
N  117 I 117
A  118 C 118
K  119 K 119
A  120 A 120
A  121 G 121
A  122 A 122
A  123 A 123
A  124 E 124
K  125 L 125
G  126 G 126
M  127 I 127
P  128 P 128
L  129 L 129
Y  130 Y 130
E  131 R 131
H  132 H 132
I  133 I 133
A  134 A 134
E  135 N 135
L  136 L 136
N  137 A 137
T  139 N 138
P  140 Y 139
G  141 D 140
K  142 E 141
Y  143 V 142
S  144 I 143
M  145 L 144
P  146 P 145
V  147 V 146
P  148 P 147
M  149 A 148
M  150 F 149
N  151 N 150
I  152 V 151
I  153 I 152
N  154 N 153
G  155 G 154
G  156 G 155
E  157 S 156
H  158 H 157
A  159 A 158
D  160 G 159
N  161 N 160
N  162 K 161
V  163 L 162
D  164 A 163
I  165 M 164
Q  166 Q 165
E  167 E 166
F  168 F 167
M  169 M 168
I  170 I 169
Q  171 L 170
P  172 P 171
V  173 T 172
G  174 G 173
A  175 A 174
K  176 T 175
T  177 S 176
V  178 F 177
K  179 T 178
E  180 E 179
A  181 A 180
I  182 M 181
R  183 R 182
M  184 M 183
G  185 G 184
S  186 T 185
E  187 E 186
V  188 V 187
F  189 Y 188
H  190 H 189
H  191 H 190
L  192 L 191
A  193 K 192
K  194 A 193
V  195 V 194
L  196 I 195
K  197 K 196
A  198 A 197
K  199 R 198
G  200 F 199
M  201 G 200
N  202 A 203
T  203 T 204
A  204 A 205
V  205 V 206
G  206 G 207
D  207 D 208
E  208 E 209
G  209 G 210
G  210 G 211
Y  211 F 212
A  212 A 213
P  213 P 214
N  214 N 215
L  215 I 216
G  216 L 217
S  217 N 218
N  218 N 219
A  219 K 220
E  220 D 221
A  221 A 222
L  222 L 223
A  223 D 224
V  224 L 225
I  225 I 226
A  226 Q 227
E  227 E 228
A  228 A 229
V  229 I 230
K  230 K 231
A  231 K 232
A  232 A 233
G  233 G 234
Y  234 Y 235
E  235 T 236
K  238 G 237
D  239 K 238
I  240 I 239
T  241 E 240
L  242 I 241
A  243 G 242
M  244 M 243
D  245 D 244
C  246 V 245
A  247 A 246
A  248 A 247
S  249 S 248
E  250 E 249
F  251 F 250
Y  252 Y 251
K  253 K 252
D  254 Q 253
G  255 N 254
K  256 N 255
Y  257 Y 257
V  258 D 258
L  259 L 259
A  260 D 260
G  261 F 261
E  262 D 267
G  263 G 268
N  264 S 269
K  265 Q 270
A  266 K 271
F  267 I 272
T  268 S 273
S  269 G 274
E  270 D 275
E  271 Q 276
F  272 L 277
T  273 R 278
H  274 D 279
F  275 M 280
L  276 Y 281
E  277 M 282
E  278 E 283
L  279 F 284
T  280 C 285
K  281 K 286
Q  282 D 287
Y  283 F 288
P  284 P 289
I  285 I 290
V  286 V 291
S  287 S 292
I  288 I 293
E  289 E 294
D  290 D 295
G  291 P 296
L  292 F 297
D  293 D 298
E  294 Q 299
S  295 D 300
D  296 D 301
W  297 W 302
D  298 E 303
G  299 T 304
F  300 W 305
A  301 S 306
Y  302 K 307
Q  303 M 308
T  304 T 309
K  305 S 310
G  308 G 311
D  309 T 312
K  310 T 313
I  311 I 314
Q  312 Q 315
L  313 I 316
V  314 V 317
G  315 G 318
D  316 D 319
D  317 D 320
L  318 L 321
F  319 T 322
V  320 V 323
T  321 T 324
N  322 N 325
T  323 P 326
K  324 K 327
I  325 R 328
L  326 I 329
K  327 T 330
E  328 T 331
G  329 A 332
I  330 V 333
E  331 E 334
K  332 K 335
G  333 K 336
I  334 A 337
A  335 C 338
N  336 K 339
S  337 C 340
I  338 L 341
L  339 L 342
I  340 L 343
K  341 K 344
F  342 V 345
N  343 N 346
Q  344 Q 347
I  345 I 348
G  346 G 349
S  347 S 350
L  348 V 351
T  349 T 352
E  350 E 353
T  351 S 354
L  352 I 355
A  353 D 356
A  354 A 357
I  355 H 358
K  356 L 359
M  357 L 360
A  358 A 361
K  359 K 362
D  360 K 363
A  361 N 364
G  362 G 365
Y  363 W 366
T  364 G 367
A  365 T 368
V  366 M 369
I  367 V 370
S  368 S 371
H  369 H 372
R  370 R 373
S  371 S 374
G  372 G 375
E  373 E 376
T  374 T 377
E  375 E 378
D  376 D 379
A  377 C 380
T  378 F 381
I  379 I 382
A  380 A 383
D  381 D 384
L  382 L 385
A  383 V 386
V  384 V 387
G  385 G 388
T  386 L 389
A  387 C 390
A  388 T 391
G  389 G 392
Q  390 Q 393
I  391 I 394
K  392 K 395
T  393 T 396
G  394 G 397
S  395 A 398
M  396 P 399
S  397 C 400
R  398 R 401
S  399 S 402
D  400 E 403
R  401 R 404
V  402 L 405
A  403 A 406
K  404 K 407
Y  405 Y 408
N  406 N 409
Q  407 Q 410
L  408 I 411
I  409 L 412
R  410 R 413
I  411 I 414
E  412 E 415
E  413 E 416
A  414 E 417
L  415 L 418
G  416 G 419
E  417 S 420
K  418 G 421
A  419 A 422
P  420 K 423
Y  421 F 424
N  422 A 425
G  423 G 426
R  424 K 427
K  425 N 428
E  426 F 429
I  427 R 430
K  428 A 431
G  429 P 432
Q  430 S 433
TER
END

