
PFRMAT AL
TARGET T0111
AUTHOR 6305-9733-7289
REMARK Similar to 2one (chain:B).
METHOD PSI-BLAST (Altschul et al., Nucl. Acids Res. 25, 3389-3402, 1997)
METHOD (-h 0.0005 -j 20) and iterative SCANPS
METHOD (Barton et al., 2000, http://barton.ebi.ac.uk/scanps/)
METHOD were run against a combined search set comprising the SWALL, PDB and ENSEMBL
METHOD sequence databases. In these runs, 2one (chain:B) was identified as a
METHOD possible homologue. All sequences hit by PSI-BLAST with an E-value of less
METHOD than 0.0005 were collected and aligned all_against_all using AMPS
METHOD (Barton, G. J., Methods in Enzymology 183, 403-428, 1990.).
METHOD One sequence was removed from any pair sharing greater than 75%
METHOD identity. These sequences were combined with t0111 and 2one (chain:B), and
METHOD a multiple alignment was constructed by CLUSTALW (Higgins et al.,
METHOD Methods in Enz.266,383-402, 1996). The alignment between t0111
METHOD and 2one (chain:B)  was extracted, edited and corrected by hand in the
METHOD Jalview alignment editor
METHOD (M. Clamp, URL: http://www2.ebi.ac.uk/~michele/jalview/contents.html).
METHOD Secondary structure information predicted for t0111 by JPRED2 (Cuff and
METHOD Barton, 2000, Proteins 40, 502-511,2000) was incorporated.
MODEL  1
PARENT 2one_B
K 2 A B1
I 3 V B2
V 4 S B3
K 5 K B4
I 6 V B5
I 7 Y B6
G 8 A B7
R 9 R B8
E 10 S B9
I 11 V B10
I 12 Y B11
D 13 D B12
S 14 S B13
R 15 R B14
G 16 G B15
N 17 N B16
P 18 P B17
T 19 T B18
V 20 V B19
E 21 E B20
A 22 V B21
E 23 E B22
V 24 L B23
H 25 T B24
L 26 T B25
E 27 E B26
G 28 K B27
G 32 F B30
M 33 R B31
A 34 S B32
A 35 I B33
A 36 V B34
P 37 P B35
S 38 S B36
G 39 G B37
A 40 A B38
S 41 S B39
T 42 T B40
G 43 G B41
S 44 V B42
R 45 H B43
E 46 E B44
A 47 A B45
L 48 L B46
E 49 E B47
L 50 M B48
R 51 R B49
D 52 D B50
G 53 G B51
D 54 D B52
K 55 K B53
S 56 S B54
R 57 K B55
F 58 W B56
L 59 M B57
G 60 G B58
K 61 K B59
G 62 G B60
V 63 V B61
T 64 L B62
K 65 H B63
A 66 A B64
V 67 V B65
A 68 K B66
A 69 N B67
V 70 V B68
N 71 N B69
G 72 D B70
P 73 V B71
I 74 I B72
A 75 A B73
Q 76 P B74
A 77 A B75
L 78 F B76
I 79 V B77
D 82 D B82
A 83 V B83
K 84 K B84
D 85 D B85
Q 86 Q B86
A 87 K B87
G 88 A B88
I 89 V B89
D 90 D B90
K 91 D B91
I 92 F B92
M 93 L B93
I 94 I B94
D 95 S B95
L 96 L B96
D 97 D B97
G 98 G B98
T 99 T B99
E 100 A B100
N 101 N B101
K 102 K B102
S 103 S B103
K 104 K B104
F 105 L B105
G 106 G B106
A 107 A B107
N 108 N B108
A 109 A B109
I 110 I B110
L 111 L B111
A 112 G B112
V 113 V B113
S 114 S B114
L 115 L B115
A 116 A B116
N 117 A B117
A 118 S B118
K 119 R B119
A 120 A B120
A 121 A B121
A 122 A B122
A 123 A B123
A 124 E B124
K 125 K B125
G 126 N B126
M 127 V B127
P 128 P B128
L 129 L B129
Y 130 Y B130
E 131 K B131
H 132 H B132
I 133 L B133
A 134 A B134
E 135 D B135
L 136 L B136
N 137 S B137
G 138 K B138
T 139 S B139
P 140 K B140
G 141 T B141
K 142 S B142
Y 143 Y B144
S 144 V B145
M 145 L B146
P 146 P B147
V 147 V B148
P 148 P B149
M 149 F B150
M 150 L B151
N 151 N B152
I 152 V B153
I 153 L B154
N 154 N B155
G 155 G B156
G 156 G B157
E 157 S B158
H 158 H B159
A 159 A B160
D 160 G B161
N 161 G B162
N 162 A B163
V 163 L B164
D 164 A B165
I 165 L B166
Q 166 Q B167
E 167 E B168
F 168 F B169
M 169 M B170
I 170 I B171
Q 171 A B172
P 172 P B173
V 173 T B174
G 174 G B175
A 175 A B176
K 176 K B177
T 177 T B178
V 178 F B179
K 179 A B180
E 180 E B181
A 181 A B182
I 182 L B183
R 183 R B184
M 184 I B185
G 185 G B186
S 186 S B187
E 187 E B188
V 188 V B189
F 189 Y B190
H 190 H B191
H 191 N B192
L 192 L B193
A 193 K B194
K 194 S B195
V 195 L B196
L 196 T B197
K 197 K B198
A 198 K B199
K 199 R B200
G 200 Y B201
M 201 S B204
N 202 A B205
T 203 G B206
A 204 N B207
V 205 V B208
G 206 G B209
D 207 D B210
E 208 E B211
G 209 G B212
G 210 G B213
Y 211 V B214
A 212 A B215
P 213 P B216
N 214 N B217
L 215 I B218
G 216 Q B219
S 217 T B220
N 218 A B221
A 219 E B222
E 220 E B223
A 221 A B224
L 222 L B225
A 223 D B226
V 224 L B227
I 225 I B228
A 226 V B229
E 227 D B230
A 228 A B231
V 229 I B232
K 230 K B233
A 231 A B234
A 232 A B235
G 233 G B236
Y 234 H B237
E 235 D B238
L 236 G B239
D 239 K B240
I 240 V B241
T 241 K B242
L 242 I B243
A 243 G B244
M 244 L B245
D 245 D B246
C 246 C B247
A 247 A B248
A 248 S B249
S 249 S B250
E 250 E B251
F 251 F B252
Y 252 F B253
K 253 K B254
D 254 D B255
G 255 G B256
K 256 K B257
Y 257 Y B258
V 258 D B259
L 259 L B260
A 260 D B261
G 261 F B262
E 262 K B263
F 267 L B273
T 268 T B274
S 269 G B275
E 270 P B276
E 271 Q B277
F 272 L B278
T 273 A B279
H 274 D B280
F 275 L B281
L 276 Y B282
E 277 H B283
E 278 S B284
L 279 L B285
T 280 M B286
K 281 K B287
Q 282 R B288
Y 283 Y B289
P 284 P B290
I 285 I B291
V 286 V B292
S 287 S B293
I 288 I B294
E 289 E B295
D 290 D B296
G 291 P B297
L 292 F B298
D 293 A B299
E 294 E B300
S 295 D B301
D 296 D B302
W 297 W B303
D 298 E B304
G 299 A B305
F 300 W B306
A 301 S B307
Y 302 H B308
Q 303 F B309
T 304 F B310
K 305 K B311
V 306 T B312
L 307 A B313
Q 312 Q B316
L 313 I B317
V 314 V B318
G 315 A B319
D 316 D B320
D 317 D B321
L 318 L B322
F 319 T B323
V 320 V B324
T 321 T B325
N 322 N B326
T 323 P B327
K 324 K B328
I 325 R B329
L 326 I B330
K 327 A B331
E 328 T B332
G 329 A B333
I 330 I B334
E 331 E B335
K 332 K B336
G 333 K B337
I 334 A B338
A 335 A B339
N 336 D B340
S 337 A B341
I 338 L B342
L 339 L B343
I 340 L B344
K 341 K B345
F 342 V B346
N 343 N B347
Q 344 Q B348
I 345 I B349
G 346 G B350
S 347 T B351
L 348 L B352
T 349 S B353
E 350 E B354
T 351 S B355
L 352 I B356
A 353 K B357
A 354 A B358
I 355 A B359
K 356 Q B360
M 357 D B361
A 358 S B362
K 359 F B363
D 360 A B364
A 361 A B365
G 362 G B366
Y 363 W B367
T 364 G B368
A 365 V B369
V 366 M B370
I 367 V B371
S 368 S B372
H 369 H B373
R 370 R B374
S 371 S B375
G 372 G B376
E 373 E B377
T 374 T B378
E 375 E B379
D 376 D B380
A 377 T B381
T 378 F B382
I 379 I B383
A 380 A B384
D 381 D B385
L 382 L B386
A 383 V B387
V 384 V B388
G 385 G B389
T 386 L B390
A 387 R B391
A 388 T B392
G 389 G B393
Q 390 Q B394
I 391 I B395
K 392 K B396
T 393 T B397
G 394 G B398
S 395 A B399
M 396 P B400
S 397 A B401
R 398 R B402
S 399 S B403
D 400 E B404
R 401 R B405
V 402 L B406
A 403 A B407
K 404 K B408
Y 405 L B409
N 406 N B410
Q 407 Q B411
L 408 L B412
I 409 L B413
R 410 R B414
I 411 I B415
E 412 E B416
E 413 E B417
A 414 E B418
L 415 L B419
G 416 G B420
E 417 D B421
K 418 N B422
A 419 A B423
P 420 V B424
Y 421 F B425
N 422 A B426
G 423 G B427
R 424 E B428
K 425 N B429
E 426 F B430
I 427 H B431
K 428 H B432
G 429 G B433
Q 430 D B434
A 431 K B435
TER
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