
PFRMAT SS
TARGET T0111
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0111.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 15.5258
METHOD
MODEL 1
S C 0.716
K C 0.465
I E 0.407
V H 0.428
K E 0.483
I E 0.678
I E 0.752
G E 0.803
R E 0.840
E E 0.862
I E 0.794
I E 0.579
D C 0.599
S C 0.802
R C 0.952
G C 0.974
N C 0.943
P C 0.524
T E 0.864
V E 0.956
E E 0.986
A E 0.985
E E 0.981
V E 0.975
H E 0.924
L E 0.752
E C 0.741
G C 0.864
G C 0.766
F C 0.579
V C 0.475
G C 0.436
M E 0.381
A E 0.387
A C 0.401
A C 0.536
P C 0.645
S C 0.795
G C 0.810
A C 0.754
S C 0.690
T C 0.675
G C 0.749
S C 0.560
R C 0.483
E C 0.403
A E 0.396
L E 0.578
E E 0.659
L E 0.560
R C 0.654
D C 0.817
G C 0.894
D C 0.889
K C 0.900
S C 0.771
R C 0.587
F C 0.464
L C 0.457
G H 0.643
K H 0.818
G H 0.910
V H 0.947
T H 0.976
K H 0.980
A H 0.985
V H 0.981
A H 0.971
A H 0.927
V H 0.907
N H 0.837
G H 0.852
P H 0.762
I H 0.630
A H 0.495
Q H 0.599
A H 0.532
L H 0.549
I C 0.513
G C 0.936
K C 0.884
D C 0.871
A C 0.673
K C 0.686
D C 0.709
Q H 0.779
A H 0.762
G H 0.757
I H 0.743
D H 0.718
K H 0.820
I H 0.804
M H 0.791
I H 0.708
D H 0.639
L C 0.613
D C 0.844
G C 0.936
T C 0.926
E C 0.701
N C 0.612
K H 0.728
S H 0.628
K H 0.627
F H 0.579
G C 0.651
A H 0.617
N H 0.821
A H 0.927
I H 0.950
L H 0.975
A H 0.982
V H 0.989
S H 0.991
L H 0.996
A H 0.994
N H 0.995
A H 0.994
K H 0.990
A H 0.986
A H 0.975
A H 0.962
A H 0.939
A H 0.904
K H 0.846
G C 0.961
M C 0.933
P C 0.491
L H 0.968
Y H 0.990
E H 0.988
H H 0.983
I H 0.963
A H 0.917
E H 0.864
L H 0.694
N H 0.491
G C 0.786
T C 0.852
P C 0.845
G C 0.798
K C 0.644
Y E 0.476
S E 0.488
M C 0.496
P C 0.565
V C 0.505
P E 0.501
M E 0.475
M E 0.486
N E 0.415
I E 0.450
I C 0.447
N C 0.632
G C 0.728
G C 0.683
E C 0.638
H C 0.624
A C 0.680
D C 0.752
N C 0.734
N C 0.740
V C 0.723
D C 0.653
I C 0.513
Q E 0.668
E E 0.867
F E 0.889
M E 0.905
I E 0.820
Q E 0.604
P C 0.649
V C 0.891
G C 0.919
A C 0.634
K C 0.599
T C 0.494
V H 0.971
K H 0.981
E H 0.989
A H 0.984
I H 0.985
R H 0.988
M H 0.992
G H 0.991
S H 0.994
E H 0.995
V H 0.995
F H 0.993
H H 0.995
H H 0.994
L H 0.992
A H 0.992
K H 0.990
V H 0.978
L H 0.960
K H 0.931
A H 0.888
K H 0.732
G C 0.563
M C 0.856
N C 0.790
T C 0.716
A C 0.709
V C 0.690
G C 0.701
D C 0.771
E C 0.835
G C 0.866
G C 0.844
Y C 0.786
A C 0.817
P C 0.857
N C 0.830
L C 0.816
G C 0.838
S C 0.797
N H 0.565
A H 0.854
E H 0.929
A H 0.964
L H 0.986
A H 0.990
V H 0.993
I H 0.995
A H 0.994
E H 0.993
A H 0.980
V H 0.975
K H 0.964
A H 0.937
A H 0.805
G C 0.976
Y C 0.899
E C 0.870
L C 0.914
G C 0.912
K C 0.725
D E 0.678
I E 0.923
T E 0.954
L E 0.965
A E 0.952
M E 0.893
D E 0.689
C E 0.467
A H 0.403
A H 0.641
S H 0.699
E H 0.648
F H 0.605
Y H 0.551
K C 0.476
D C 0.595
G C 0.789
K C 0.681
Y C 0.534
V E 0.460
L E 0.499
A C 0.459
G C 0.542
E C 0.640
G C 0.699
N C 0.778
K C 0.646
A C 0.598
F C 0.675
T C 0.873
S H 0.906
E H 0.953
E H 0.972
F H 0.970
T H 0.980
H H 0.982
F H 0.985
L H 0.976
E H 0.981
E H 0.972
L H 0.952
T H 0.922
K H 0.838
Q H 0.690
Y C 0.908
P C 0.936
I E 0.769
V E 0.912
S E 0.876
I E 0.731
E C 0.671
D C 0.912
G C 0.909
L C 0.935
D C 0.965
E H 0.874
S H 0.899
D H 0.922
W H 0.967
D H 0.972
G H 0.976
F H 0.973
A H 0.975
Y H 0.965
Q H 0.929
T H 0.835
K H 0.776
V H 0.630
L C 0.594
G C 0.888
D C 0.814
K C 0.567
I E 0.805
Q E 0.943
L E 0.954
V E 0.903
G E 0.525
D C 0.682
D C 0.496
L E 0.542
F E 0.543
V C 0.550
T C 0.828
N C 0.911
T H 0.937
K H 0.968
I H 0.975
L H 0.984
K H 0.983
E H 0.981
G H 0.952
I H 0.901
E H 0.762
K H 0.728
G C 0.549
I C 0.747
A C 0.770
N C 0.542
S E 0.937
I E 0.974
L E 0.986
I E 0.968
K E 0.831
F E 0.593
N C 0.529
Q C 0.405
I H 0.500
G H 0.626
S H 0.726
L H 0.944
T H 0.972
E H 0.985
T H 0.984
L H 0.992
A H 0.993
A H 0.994
I H 0.992
K H 0.991
M H 0.987
A H 0.979
K H 0.957
D H 0.909
A H 0.641
G C 0.975
Y C 0.769
T E 0.724
A E 0.919
V E 0.966
I E 0.927
S E 0.844
H E 0.512
R C 0.815
S C 0.896
G C 0.969
E C 0.888
T C 0.855
E C 0.488
D H 0.516
A H 0.767
T H 0.734
I H 0.770
A H 0.780
D H 0.749
L H 0.678
A H 0.806
V H 0.775
G H 0.681
T H 0.489
A C 0.467
A H 0.648
G C 0.487
Q H 0.492
I H 0.558
K H 0.578
T H 0.470
G C 0.940
S C 0.708
M C 0.666
S C 0.802
R C 0.704
S H 0.747
D H 0.911
R H 0.943
V H 0.963
A H 0.979
K H 0.982
Y H 0.976
N H 0.977
Q H 0.984
L H 0.989
I H 0.993
R H 0.993
I H 0.995
E H 0.996
E H 0.993
A H 0.985
L H 0.941
G C 0.607
E C 0.624
K C 0.618
A C 0.494
P E 0.448
Y E 0.527
N C 0.550
G C 0.743
R C 0.662
K C 0.643
E C 0.668
I C 0.741
K C 0.813
G C 0.858
Q C 0.900
A C 0.950
END

