
PFRMAT AL
TARGET T0112
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.82 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1pjca1
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  4
PARENT 1pjc_A
A  68     A   136
S  69     G   137
G  70     R   138
T  71     L   139
V  72     S   140
V  73     V   141
K  74     Q   142
V  75     F   143
G  76     G   144
K  77     A   145
N  78     R   146
V  79     F   147
K  80     L   148
H  81     E   149
L  82     R   150
K  83     Q   151
K  84     Q   152
G  85     G   153
S 155     G   154
V 156     R   155
G 157     G   156
V 158     V   157
H 159     L   158
A 160     L   159
C 161     G   160
R 162     G   161
R 163     V   162
A 164     P   163
G 165     G   164
V 166     V   165
Q 167     K   166
L 168     P   167
G 169     G   168
T 171     K   169
V 172     V   170
L 173     V   171
V 174     I   172
I 175     L   173
G 176     G   174
A 177     G   175
G 178     G   176
P 179     V   177
I 180     V   178
G 181     G   179
L 182     T   180
V 183     E   181
S 184     A   182
V 185     A   183
L 186     K   184
A 187     M   185
A 188     A   186
K 189     V   187
A 190     G   188
Y 191     L   189
G 192     G   190
A 193     A   191
F 194     Q   192
V 195     V   193
V 196     Q   194
C 197     I   195
T 198     F   196
A 199     D   197
R 200     I   198
S 201     N   199
P 202     V   200
R 203     E   201
R 204     R   202
L 205     L   203
E 206     S   204
V 207     Y   205
A 208     L   206
K 209     E   207
N 210     T   208
C 211     L   209
G 212     G   211
A 213     S   212
D 214     R   213
V 215     V   214
T 216     E   215
L 217     L   216
V 218     L   217
V 219     Y   218
D 220     S   219
P 221     N   220
A 222     S   221
K 223     A   222
E 224     E   223
E 225     I   224
E 226     E   225
S 227     T   226
S 228     A   227
I 229     V   228
I 230     A   229
E 231     E   230
R 232     A   231
D 239     D   232
L 240     L   233
P 241     L   234
N 242     I   235
V 243     G   236
T 244     A   237
I 245     V   238
D 246     L   239
C 247     V   240
S 248     P   241
G 249     G   242
N 250     R   243
E 251     R   244
K 252     A   245
C 253     P   246
I 254     I   247
T 255     L   248
I 256     V   249
G 257     P   250
I 258     A   251
N 259     S   252
I 260     L   253
T 261     V   254
R 262     E   255
T 263     Q   256
G 264     M   257
G 265     T   259
T 266     G   260
L 267     S   261
M 268     V   262
L 269     I   263
V 270     V   264
G 271     D   265
M 272     V   266
G 273     A   267
S 274     V   268
Q 275     D   269
M 276     Q   270
E 288     G   271
I 289     G   272
D 290     C   273
I 291     V   274
K 292     E   275
S 293     T   276
V 294     L   277
F 295     H   278
R 296     P   279
Y 297     T   280
C 298     S   281
N 299     H   282
D 300     T   283
Y 301     Q   284
P 302     P   285
R 312     T   286
C 313     Y   287
N 314     E   288
V 315     V   289
K 316     F   290
Q 317     G   291
L 318     V   292
V 319     V   293
T 320     H   294
H 321     Y   295
S 322     G   296
F 323     V   297
K 324     P   298
S 348     N   299
C 349     M   300
R 350     P   301
Q 351     G   302
G 352     A   303
TER
END

