
PFRMAT AL
TARGET T0113
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.97 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd2hdha2
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 2hdh_A
R   6     K    12
S   7     I    13
V   8     I    14
K   9     V    15
G  10     K    16
L  11     H    17
V  12     V    18
A  13     T    19
V  14     V    20
I  15     I    21
T  16     G    22
G  17     G    23
G  21     G    24
L  22     L    25
G  23     G    27
L  24     A    28
S  25     G    29
T  26     I    30
A  27     A    31
K  28     Q    32
R  29     V    33
L  30     A    34
V  31     A    35
G  32     A    36
Q  33     T    37
G  34     G    38
A  35     H    39
T  36     T    40
A  37     V    41
V  38     V    42
L  39     L    43
L  40     V    44
D  41     D    45
V  42     Q    46
P  43     T    47
N  44     E    48
S  45     D    49
E  46     I    50
G  47     L    51
E  48     A    52
T  49     K    53
E  50     S    54
A  51     K    55
K  52     K    56
K  53     G    57
L  54     I    58
G  55     E    59
G  56     E    60
N  57     S    61
C  58     L    62
I  59     R    63
F  60     K    64
A  61     V    65
P  62     A    66
A  63     K    67
N  64     K    68
V  65     K    69
T  66     F    70
S  67     A    71
E  68     E    72
E  70     N    73
V  71     P    74
Q  72     K    75
A  73     A    76
A  74     G    77
L  75     D    78
T  76     E    79
L  77     F    80
A  78     V    81
K  79     A    82
E  80     K    83
K  81     T    84
F  82     L    85
G  83     S    86
R  84     T    87
I  85     I    88
D  86     A    89
V  87     T    90
A  88     S    91
V  89     T    92
N  90     D    93
C  91     A    94
A  92     A    95
G  93     S    96
I  94     V    97
V 117     V    98
I 118     H    99
N 119     S   100
V 120     T   101
N 121     D   102
L 122     L   103
I 123     V   104
G 124     V   105
T 125     E   106
F 126     A   107
N 127     I   108
V 128     V   109
I 129     E   110
R 130     N   111
L 131     L   112
V 132     K   113
A 133     V   114
G 134     K   115
V 135     N   116
M 136     E   117
G 137     L   118
Q 138     F   119
N 139     K   120
E 140     R   121
P 141     L   122
D 142     D   123
Q 143     K   124
G 144     R   125
G 145     A   126
Q 146     A   127
R 147     E   128
G 148     H   129
V 149     T   130
I 150     I   131
I 151     F   132
N 152     A   133
T 153     S   134
A 154     N   135
S 155     T   136
S 171     S   137
K 172     S   138
G 173     L   139
G 174     Q   140
I 175     I   141
V 176     T   142
G 177     S   143
M 178     I   144
T 179     A   145
L 180     N   146
P 181     A   147
I 182     T   148
A 183     T   149
R 184     R   150
D 185     Q   151
L 186     D   152
A 187     R   153
P 188     F   154
I 189     A   155
G 190     G   156
I 191     L   157
R 192     H   158
V 193     F   159
V 194     F   160
T 195     N   161
I 196     P   162
A 197     V   163
P 198     P   164
G 199     V   165
L 200     K   167
F 201     L   168
A 202     V   169
T 203     E   170
P 204     V   171
L 205     I   172
L 206     K   173
T 207     T   174
T 208     P   175
L 209     T   177
P 210     S   178
D 211     Q   179
K 212     K   180
V 213     T   181
R 214     F   182
N 215     E   183
F 216     S   184
L 217     L   185
A 218     V   186
S 219     D   187
Q 220     F   188
V 221     S   189
P 222     K   190
F 223     A   191
P 224     L   192
S 225     G   193
R 226     K   194
D 229     H   195
P 230     P   196
A 231     V   197
E 232     S   198
Y 233     C   199
A 234     K   200
H 235     D   201
Q 260     T   202
P 261     P   203
TER
END

