
PFRMAT AL
TARGET T0113
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1hdc_A
R    6 N 2
S    7 D 3
V    8 L 4
K    9 S 5
G   10 G 6
L   11 K 7
V   12 T 8
A   13 V 9
V   14 I 10
I   15 I 11
T   16 T 12
G   17 G 13
G   18 G 14
A   19 A 15
S   20 R 16
G   21 G 17
L   22 L 18
G   23 G 19
L   24 A 20
S   25 E 21
T   26 A 22
A   27 A 23
K   28 R 24
R   29 Q 25
L   30 A 26
V   31 V 27
G   32 A 28
Q   33 A 29
G   34 G 30
A   35 A 31
T   36 R 32
A   37 V 33
V   38 V 34
L   39 L 35
L   40 A 36
D   41 D 37
V   42 V 38
P   43 L 39
N   44 D 40
S   45 E 41
E   46 E 42
G   47 G 43
E   48 A 44
T   49 A 45
E   50 T 46
A   51 A 47
K   52 R 48
K   53 E 49
L   54 L 50
G   55 G 51
G   56 D 52
N   57 A 53
C   58 A 54
I   59 R 55
F   60 Y 56
A   61 Q 57
P   62 H 58
A   63 L 59
N   64 D 60
V   65 V 61
T   66 T 62
S   67 I 63
E   68 E 64
K   69 E 65
E   70 D 66
V   71 W 67
Q   72 Q 68
A   73 R 69
A   74 V 70
L   75 V 71
T   76 A 72
L   77 Y 73
A   78 A 74
K   79 R 75
E   80 E 76
K   81 E 77
F   82 F 78
G   83 G 79
R   84 S 80
I   85 V 81
D   86 D 82
V   87 G 83
A   88 L 84
V   89 V 85
N   90 N 86
C   91 N 87
A   92 A 88
G   93 G 89
I   94 I 90
A   95 S 91
V   96 T 92
A   97 G 93
I   98 M 94
K   99 F 95
T  100 L 96
Q  107 E 97
V  108 T 98
H  109 E 99
T  110 S 100
L  111 V 101
E  112 E 102
D  113 R 103
F  114 F 104
Q  115 R 105
R  116 K 106
V  117 V 107
I  118 V 108
N  119 E 109
V  120 I 110
N  121 N 111
L  122 L 112
I  123 T 113
G  124 G 114
T  125 V 115
F  126 F 116
N  127 I 117
V  128 G 118
I  129 M 119
R  130 K 120
L  131 T 121
V  132 V 122
A  133 I 123
G  134 P 124
V  135 A 125
M  136 M 126
G  137 K 127
Q  138 D 128
G  145 A 129
Q  146 G 130
R  147 G 131
G  148 G 132
V  149 S 133
I  150 I 134
I  151 V 135
N  152 N 136
T  153 I 137
A  154 S 138
S  155 S 139
V  156 A 140
A  157 A 141
A  158 G 142
F  159 L 143
E  160 M 144
G  161 G 145
Q  162 L 146
V  163 A 147
G  164 L 148
Q  165 T 149
A  166 S 150
A  167 S 151
Y  168 Y 152
S  169 G 153
A  170 A 154
S  171 S 155
K  172 K 156
G  173 W 157
G  174 G 158
I  175 V 159
V  176 R 160
G  177 G 161
M  178 L 162
T  179 S 163
L  180 K 164
P  181 L 165
I  182 A 166
A  183 A 167
R  184 V 168
D  185 E 169
L  186 L 170
A  187 G 171
P  188 T 172
I  189 D 173
G  190 R 174
I  191 I 175
R  192 R 176
V  193 V 177
V  194 N 178
T  195 S 179
I  196 V 180
A  197 H 181
P  198 P 182
G  199 G 183
L  200 M 184
F  201 T 185
A  202 Y 186
T  203 T 187
P  204 P 188
L  205 M 189
L  206 T 190
T  207 A 191
T  208 E 192
L  209 T 193
P  210 G 194
D  211 I 195
K  212 R 196
V  213 Q 197
R  214 G 198
N  215 E 199
F  216 G 200
L  217 N 201
A  218 Y 202
S  219 P 203
Q  220 N 204
V  221 T 205
P  222 P 206
F  223 M 207
S  225 G 208
R  226 R 209
L  227 V 210
G  228 G 211
D  229 E 213
P  230 P 214
A  231 G 215
E  232 E 216
Y  233 I 217
A  234 A 218
H  235 G 219
L  236 A 220
V  237 V 221
Q  238 V 222
M  239 K 223
V  240 L 224
I  241 L 225
E  242 S 226
N  243 D 227
P  244 S 230
F  245 Y 231
L  246 V 232
N  247 T 233
G  248 G 234
E  249 A 235
V  250 E 236
I  251 L 237
R  252 A 238
L  253 V 239
D  254 D 240
G  255 G 241
A  256 G 242
I  257 W 243
R  258 T 244
M  259 T 245
Q  260 G 246
P  261 P 247
TER
END

