
PFRMAT AL
TARGET T0115
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.99 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: Arg_repressor_N
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1aoy
M   1     M     1
R   2     R     2
S  98     S     3
A  99     S     4
A 100     A     5
S 101     K     6
S 102     Q     7
A 103     E     8
G 104     E     9
T 105     L    10
A 106     V    11
Y 107     K    12
A 108     A    13
I 109     F    14
N 110     K    15
E 111     A    16
L 112     L    17
F 113     L    18
K 114     K    19
L 115     E    20
N 116     E    21
N 202     K    22
V 203     F    23
G 204     S    24
K 205     S    25
A 206     Q    26
C 207     G    27
G 208     E    28
M 209     I    29
V 210     V    30
Y 211     A    31
A 212     A    32
L 213     L    33
Y 214     Q    34
N 215     E    35
K 216     Q    36
D 217     G    37
K 218     F    38
S 219     D    39
L 220     N    40
F 221     I    41
N 241     N    42
Y 242     Q    43
F 243     S    44
K 244     K    45
I 245     V    46
K 246     S    47
E 247     R    48
E 248     M    49
V 249     L    50
K 250     T    51
D 251     K    52
K 252     F    53
V 253     G    54
Y 254     A    55
G 255     V    56
I 256     R    57
T 257     T    58
I 258     R    59
S 259     N    60
G 260     A    61
S 261     K    62
G 262     M    63
P 263     E    64
S 264     M    65
I 265     V    66
I 266     Y    67
A 267     C    68
F 268     L    69
P 269     P    70
K 270     A    71
D 283     E    72
Y 284     L    73
G 296     G    74
V 297     V    75
E 298     P    76
V 299     T    77
V 300     T    78
TER
END

