
PFRMAT AL
TARGET T0115
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.92 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1bqsa1
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  4
PARENT 1bqs_A
V  24     V     1
F  25     K     2
G  26     P     3
L  27     L     4
C  28     Q     5
L  29     V     6
K  30     E     7
E  31     P     8
P  32     P     9
Y  33     E    10
D  34     P    11
V  35     V    12
I  36     V    13
E  37     A    14
V  38     V    15
E  39     A    16
A  40     L    17
I  41     G    18
D  42     A    19
D  43     S    20
K  44     R    21
E  45     Q    22
I  46     L    23
I  47     T    24
I  48     C    25
E  49     R    26
V  50     L    27
D  51     A    28
D  52     C    29
K  53     A    30
N  54     D    31
K  79     R    32
G  80     G    33
V  81     A    34
K  82     S    35
I  83     V    36
T  84     Q    37
I  85     W    38
K  86     R    39
G  94     G    40
L  95     L    41
G  96     D    42
S  97     T    43
S  98     S    44
Y 254     L    45
G 255     G    46
I 256     A    47
T 257     V    48
I 258     Q    49
S 259     S    50
G 260     D    51
S 261     T    52
G 262     G    53
P 263     R    54
S 264     S    55
I 265     V    56
I 266     L    57
A 267     T    58
F 268     V    59
P 269     R    60
K 270     N    61
E 271     S    63
E 272     L    64
F 273     S    65
I 274     A    66
D 275     A    67
E 276     G    68
V 277     T    69
E 278     R    70
N 279     V    71
I 280     C    72
L 281     V    73
R 282     G    74
D 283     S    75
Y 284     C    76
Y 285     G    77
E 286     G    78
N 287     R    79
T 288     T    80
I 289     F    81
R 290     Q    82
T 291     H    83
E 292     T    84
V 293     V    85
G 294     Q    86
K 295     L    87
G 296     L    88
V 297     V    89
E 298     Y    90
TER
END

