
PFRMAT AL
TARGET T0115
AUTHOR 5505-7671-7042
REMARK  
REMARK 1NIP (model 1) has some structural similarity with 1SBP (model 2).
REMARK  
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 3aky
L 190    I  95
P 191    P  96
K 192    Q  97
A 193    A  98
V 194    E  99
G 195    K 100
L 196    L 101
K 197    D 102
D 198    Q 103
L 199    M 104
V 200    L 105
N 201    K 106
N 202    E 107
V 203    Q 108
G 204    G 109
K 205    T 110
A 206    P 111
C 207    L 112
G 208    E 113
M 209    K 114
V 210    A 115
Y 211    I 116
A 212    E 117
L 213    L 118
Y 214    K 119
N 215    V 120
K 216    D 121
D 217    D 122
K 218    E 123
S 219    L 124
L 220    L 125
F 221    V 126
G 222    A 127
R 223    R 128
M 226    I 129
S 227    T 130
D 228    G 131
K 229    R 132
V 230    L 133
I 231    I 134
E 232    H 135
P 233    P 136
V 234    A 137
R 235    S 138
G 236    G 139
K 237    R 140
L 238    S 141
I 239    Y 142
P 240    H 143
N 241    K 144
Y 242    I 145
F 243    F 146
K 244    N 147
I 245    P 148
K 246    K 150
E 247    E 151
E 248    D 152
V 249    M 153
K 250    K 154
D 251    D 155
K 252    D 156
V 253    V 157
Y 254    T 158
G 255    G 159
I 256    A 161
T 257    L 162
I 258    V 163
S 259    Q 164
G 260    R 165
S 261    S 166
G 262    D 167
P 263    D 168
S 264    N 169
I 265    A 170
I 266    D 171
A 267    A 172
F 268    L 173
P 269    K 174
K 270    K 175
E 271    R 176
E 272    A 179
F 273    Y 180
I 274    H 181
D 275    A 182
E 276    Q 183
V 277    T 184
E 278    E 185
N 279    P 186
I 280    I 187
L 281    V 188
D 283    D 189
Y 284    F 190
Y 285    Y 191
E 286    K 192
N 287    K 193
T 288    T 194
I 289    G 195
TER
END

