
PFRMAT AL
TARGET T0115
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1mfo_A
S 127    T 118
Y 128    L 119
G 129    A 120
E 130    E 121
L 131    L 122
A 132    C 123
S 133    Q 124
S 134    A 125
G 135    A 126
A 136    L 127
K 137    Q 128
H 138    R 129
A 139    S 130
D 140    D 131
N 141    N 132
V 142    T 133
A 143    A 134
G 149    N 136
F 150    L 137
T 151    L 138
M 152    L 139
V 153    K 140
T 154    T 141
N 155    I 142
Y 156    G 143
E 157    G 144
P 158    P 145
L 159    A 146
E 160    A 147
V 161    V 148
L 162    T 149
H 163    A 150
I 164    F 151
P 165    A 152
I 166    R 153
D 167    S 154
F 168    V 155
K 169    G 156
D 171    D 157
I 172    E 158
L 173    R 159
I 174    T 160
A 175    R 161
I 176    L 162
P 177    D 163
N 178    R 164
I 179    W 165
S 180    E 166
I 181    V 167
N 182    E 168
T 183    L 169
K 184    N 170
E 185    S 171
A 186    A 172
R 187    I 173
E 188    P 174
I 189    G 175
L 190    D 176
P 191    P 177
K 192    R 178
A 193    D 179
V 203    G 189
G 204    Y 190
K 205    R 191
A 206    A 192
C 207    I 193
G 208    L 194
M 209    A 195
V 210    G 196
Y 211    D 197
A 212    A 198
L 213    L 199
Y 214    S 200
N 215    P 201
K 216    P 202
D 217    Q 203
K 218    R 204
S 219    G 205
L 220    L 206
F 221    L 207
G 222    E 208
R 223    D 209
Y 224    W 210
M 225    M 211
M 226    R 212
S 227    A 213
D 228    N 214
K 229    Q 215
V 230    T 216
I 231    S 217
E 232    S 220
P 233    M 221
V 234    R 222
R 235    A 223
G 236    G 224
I 239    L 225
P 240    P 226
N 241    E 227
Y 242    G 228
F 243    W 229
K 244    T 230
I 245    T 231
K 246    A 232
E 247    D 233
E 248    K 234
V 249    T 235
K 250    G 236
D 251    S 237
K 252    G 238
V 253    D 240
Y 254    Y 241
G 255    G 242
I 256    S 243
T 257    T 244
I 258    N 245
S 259    D 246
G 260    A 247
S 261    G 248
TER
END

